prot_H-canaliculatus_F_contig13854.3059.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13854.3059.1
Unique Nameprot_H-canaliculatus_F_contig13854.3059.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length92
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.750e-29
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 0 
Query:    1 NDLLEAVRRSDAALSSVVADWVSACQEDSSSAMTELLNFILLSCGAPSTEGPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAPQLGKKAA 91
            N L+EAV R+D ALSSVV+DWVS+ +EDS  AM ELLNF+ L+CGAPSTEGPY PP   S+++MDGEQW ELL+ V +D+QG P  G K A
Sbjct:  208 NGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNFVFLACGAPSTEGPYGPPSDVSVIEMDGEQWVELLKVVIEDMQGQP--GTKGA 296
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BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   22 VSACQEDSSSAMTELLNFILLSCGAPSTEGPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAP 84
            VS+ ++DS  AM ELLNFI L+CGAPST GPY PP   S+++MDGEQWAELL+ V +D+QG P
Sbjct:    3 VSSYKKDSDKAMQELLNFIFLACGAPSTAGPYGPPADVSVIEMDGEQWAELLKVVIEDMQGQP 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R2_ECTSI6.750e-2963.74Sister chromatid cohesion complex Cohesin, subunit... [more]
A0A6H5J7R4_9PHAE2.250e-1863.49SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13854contigH-canaliculatus_F_contig13854:1080..2353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13854.3059.1mRNA_H-canaliculatus_F_contig13854.3059.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13854 1080..2355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13854.3059.1 ID=prot_H-canaliculatus_F_contig13854.3059.1|Name=mRNA_H-canaliculatus_F_contig13854.3059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
NDLLEAVRRSDAALSSVVADWVSACQEDSSSAMTELLNFILLSCGAPSTE
GPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAPQLGKKAAS
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