prot_H-canaliculatus_F_contig137.2966.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig137.2966.1
Unique Nameprot_H-canaliculatus_F_contig137.2966.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length151
Homology
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 2.240e-85
Identity = 128/151 (84.77%), Postives = 144/151 (95.36%), Query Frame = 0
Query:    1 MEGVDDEENANLLQFGPDH-KEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGGQGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLYS 150
            MEGVDDEENANLLQFGP+H K++MSCLSNAEV+++LEKQR+ YEEKDINVTPAFSKTMSYVKRFGG GG+ ++T+TSE+RE LQQFE FHEGES+RLHQFEIMQVANLMQ+DSEVEE+LALIPSLG RL+EEDLENILAIVRKHQHSRLYS
Sbjct:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 100 bits (248), Expect = 5.750e-24
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   EGE+V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:    8 VVDTEDAAELNLGDDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.300e-23
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   +GE+V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:    8 VVDTEDAAELNLGGDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 95.9 bits (237), Expect = 2.580e-22
Identity = 64/144 (44.44%), Postives = 91/144 (63.19%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGE--SVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L    F+   +G+   VRL +FEI  ++NL  +  EVEE +AL+PSL  R +E+++E IL IV +
Sbjct:    8 VIDTEDAAELNLGDDFRHE-TCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNL--NPEEVEESVALVPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.160e-22
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES----VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLY 149
            V D E+A  L  G D ++E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L       E +     +RL +FEI  ++NL  +  EVEE ++LIPSL  R +EE++E IL IV + + +R+Y
Sbjct:    8 VVDTEDAAELNLGEDFRDE-TCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNL--NPEEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.510e-22
Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIV 140
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   EGE V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV
Sbjct:    8 VVDTEDAAELNLGDDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLHKRFAEDEIEEILGIV 146          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.510e-22
Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 0
Query:    6 DEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES-------VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            D E+A  L  G D ++E +CLSNAEVA+ILEKQ+  YE  +  +T  F KT SYV+RF G +   A   S +E+RE L  +E   E          VRL +FEI  ++NL  +  E EE +ALIPSL  + +EED++ IL I+ +
Sbjct:   13 DTEDAAELNLGEDFQQE-TCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNL--NPEEPEEAMALIPSLNKKFTEEDIDEILQIIAR 154          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 91.7 bits (226), Expect = 1.280e-20
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES-------VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            +D E+ A L+  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L  +E   E          +RL +FEI  ++NL  +  E EE +ALIPSL  R +E+D+E IL+I+ +
Sbjct:   10 IDTEDAAELI-LGEDFQGE-TCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A2D4BKN8_PYTIN (DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKN8_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 2.900e-20
Identity = 66/144 (45.83%), Postives = 90/144 (62.50%), Query Frame = 0
Query:    4 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGES--VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F    +G+   VRL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:  405 VVDTEDAAELNLGDDFRHE-TCLSNAEVAVILEKQKSDYETQEKQLTGVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFPREEDGQKTEVRLEEFEIACLSNL--NPEEVEEAVALIPSLQKRFAEDEIEEILGIVSR 545          
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A6A3KCE9_9STRA (RPOL4c domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KCE9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.940e-20
Identity = 61/143 (42.66%), Postives = 82/143 (57.34%), Query Frame = 0
Query:    1 MEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 142
            ME  D    A  L  G D ++E+ CLSNAEVAIILEKQ++ Y E+    T AF KT SYV RF G +       S  E+RE LQ     H+ E  RL +FEI  ++NL    +E  E +ALIPSL    ++ ++E IL ++ +
Sbjct:    9 MESTD----AAALNIGEDFEDEV-CLSNAEVAIILEKQKINYVEQKKTFTRAFKKTESYVLRFTGTRDPLVNQASVIELREALQSISFEHDDEVHRLEEFEIACLSNLNPEGAE--EAVALIPSLSKHFTDNEIEEILGMISR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FT81_ECTSI2.240e-8584.77RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
H3GHD4_PHYRM5.750e-2447.22RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
A0A3M6VV57_9STRA2.300e-2346.53RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
A0A8K1FR52_PYTOL2.580e-2244.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W0U0_9STRA5.160e-2243.05Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A3F2S3S1_9STRA8.510e-2247.89Helicase C-terminal domain-containing protein n=1 ... [more]
A0A024TL56_9STRA8.510e-2243.45RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A067CZ22_SAPPC1.280e-2042.18RPOL4c domain-containing protein n=4 Tax=Saprolegn... [more]
A0A2D4BKN8_PYTIN2.900e-2045.83DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythi... [more]
A0A6A3KCE9_9STRA2.940e-2042.66RPOL4c domain-containing protein n=4 Tax=Phytophth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 18..147
e-value: 1.4E-5
score: 32.6
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 7..146
e-value: 6.5E-29
score: 102.3
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 25..143
e-value: 9.5E-13
score: 48.6
NoneNo IPR availablePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 6..144
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 6..144
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 6..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig137contigH-canaliculatus_F_contig137:55002..57721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig137.2966.1mRNA_H-canaliculatus_F_contig137.2966.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig137 54803..58632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig137.2966.1 ID=prot_H-canaliculatus_F_contig137.2966.1|Name=mRNA_H-canaliculatus_F_contig137.2966.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
MEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVT
PAFSKTMSYVKRFGGQGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFE
IMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLYS
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like_sf
IPR005574RPB4/RPC9
IPR038324Rpb4/RPC9_sf
IPR006590RNA_pol_Rpb4/RPC9_core