prot_H-canaliculatus_F_contig13502.2843.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig13502.2843.1
Unique Name	prot_H-canaliculatus_F_contig13502.2843.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	110

Homology

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 8.620e-57
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0

Query:   11 PDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 109
            PDGMAMP VHTGVIRMRGLPFSATKQDV+NFFQGMPVTED+IQFVVRGDGRVTGEAFVSF SPA+SEAAMSRNG HMGTRYVELF ST EEI+RHMNRT
Sbjct:  207 PDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEAAMSRNGNHMGTRYVELFASTPEEIVRHMNRT 305

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.660e-41
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 0

Query:    7 GALGPDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            G+    G A  A HTGVIRMRGLPFSATK DV+NFFQG+ V ++S+QFVVRGDGRVTGEAFV+  SPA++EAAM RNG +MG+RY+ELFPS  EE  RH +R
Sbjct:  122 GSAAATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAEAAMQRNGSNMGSRYIELFPSAIEEAARHTSR 223

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.460e-29
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 0

Query:   20 HTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            HTG++R+RGLPFSA+K DV++FF G  + EDSI+FVVR DGRVTGE++V F SP  ++AAM+R+   +G+RYVELF ST +E  R   R
Sbjct:   23 HTGILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSPDAAKAAMARDRNVIGSRYVELFISTPDEYQRVTGR 111

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A1J3H8S3_NOCCA (Heterogeneous nuclear ribonucleoprotein H3 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H8S3_NOCCA)

HSP 1 Score: 108 bits (271), Expect = 1.760e-28
Identity = 50/91 (54.95%), Postives = 70/91 (76.92%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            A HTGV+R+RGLPFSA K+D+I+FF+   ++EDS+   V G+GR TGEAFV FGS  +S AAM ++ K +G+RY+ELFPS+ EE+   ++R
Sbjct:   30 AEHTGVLRLRGLPFSAGKEDIIDFFKDFELSEDSVHVTVNGEGRPTGEAFVEFGSAHESRAAMVKDRKTLGSRYIELFPSSIEELEEALSR 120

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: UPI0006AB33F4 (heterogeneous nuclear ribonucleoprotein H3-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB33F4)

HSP 1 Score: 106 bits (264), Expect = 1.290e-27
Identity = 48/91 (52.75%), Postives = 70/91 (76.92%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            A HTG++R+RGLPFSA K+D+++FF+   ++EDSI   V G+GR TG+AFV FGS  +S AAM ++ K +G+RY+ELFPS+ EE+   ++R
Sbjct:   14 ADHTGILRLRGLPFSAGKEDILDFFKDFDLSEDSIHVTVNGEGRPTGDAFVEFGSAEESRAAMVKDRKMLGSRYIELFPSSVEELEDALSR 104

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A103XHG3_CYNCS (Nucleotide-binding, alpha-beta plait n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XHG3_CYNCS)

HSP 1 Score: 112 bits (280), Expect = 1.610e-27
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEE 101
            A HTGV+R+RGLPFSA + D+++FF+   ++EDSI F V  +GRVTGEAFV F SP DS AAM ++G  +G+RY+ELFPST EE
Sbjct:  164 AEHTGVLRLRGLPFSANRDDIVDFFKDSDLSEDSIYFTVNSEGRVTGEAFVKFASPEDSRAAMVKDGMSLGSRYIELFPSTLEE 247

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A7N0TIK1_KALFE (RRM domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIK1_KALFE)

HSP 1 Score: 110 bits (275), Expect = 2.100e-27
Identity = 50/91 (54.95%), Postives = 72/91 (79.12%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            AVHTGV+RMRGLP+SA+K D++NFF+   ++ED+I FV+  +GR +G+AFV F S  DS+AAM ++   +G+RYVELFPST EE+ R +++
Sbjct:  184 AVHTGVLRMRGLPYSASKDDIVNFFKDFTLSEDAIHFVLNWEGRPSGDAFVKFASAEDSKAAMVKDRMSVGSRYVELFPSTPEEMSRALSK 274

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A6D2HFU6_9BRAS (RRM domain-containing protein n=5 Tax=Brassicaceae TaxID=3700 RepID=A0A6D2HFU6_9BRAS)

HSP 1 Score: 109 bits (273), Expect = 4.800e-27
Identity = 50/91 (54.95%), Postives = 70/91 (76.92%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 108
            A HTGV+R+RGLPFSA K+D+I+FF+   ++EDS+   V G+GR TGEAFV FGS  +S AAM ++ K +G+RY+ELFPS+ EE+   ++R
Sbjct:  191 AEHTGVLRLRGLPFSAGKEDIIDFFKDFEISEDSVHVTVNGEGRPTGEAFVEFGSAHESRAAMVKDRKTLGSRYIELFPSSVEELEEALSR 281

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A2R6P847_ACTCC (Epithelial splicing regulatory protein (Fragment) n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P847_ACTCC)

HSP 1 Score: 110 bits (275), Expect = 9.440e-27
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 0

Query:   18 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 109
            A HTGV+R+RGLPFSA+K D+++FF+   ++EDSI  ++  +GR TGEAF+ F S  DS+AAMS++ K +G RY+ELFPST EE+   ++R+
Sbjct:  161 AEHTGVLRLRGLPFSASKDDIMDFFKDFVISEDSIHIIINSEGRPTGEAFMGFASAEDSKAAMSKDRKRLGNRYIELFPSTPEELDAAVSRS 252

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BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A0D6R6G5_ARACU (RRM domain-containing protein n=4 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R6G5_ARACU)

HSP 1 Score: 108 bits (269), Expect = 1.230e-26
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 0

Query:   20 HTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 109
            HTG++++RGLPFSATK+D+I FF+   ++E ++  V   DGR TGEAFV F + ADS+AAMS++   +G+RYVELFPST EE  R  +R+
Sbjct:  170 HTGILKLRGLPFSATKRDIIEFFRDYDLSESNVHIVTHSDGRATGEAFVEFSNSADSKAAMSKDKMMIGSRYVELFPSTREEASRAASRS 259

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LML1_ECTSI	8.620e-57	90.91	Heterogeneous nuclear ribonucleoprotein, putative ...	[more]
A0A836CJZ5_9STRA	7.660e-41	67.65	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7S2V6E7_9STRA	3.460e-29	58.43	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A1J3H8S3_NOCCA	1.760e-28	54.95	Heterogeneous nuclear ribonucleoprotein H3 (Fragme...	[more]
UPI0006AB33F4	1.290e-27	52.75	heterogeneous nuclear ribonucleoprotein H3-like n=...	[more]
A0A103XHG3_CYNCS	1.610e-27	60.71	Nucleotide-binding, alpha-beta plait n=2 Tax=Cynar...	[more]
A0A7N0TIK1_KALFE	2.100e-27	54.95	RRM domain-containing protein n=1 Tax=Kalanchoe fe...	[more]
A0A6D2HFU6_9BRAS	4.800e-27	54.95	RRM domain-containing protein n=5 Tax=Brassicaceae...	[more]
A0A2R6P847_ACTCC	9.440e-27	53.26	Epithelial splicing regulatory protein (Fragment) ...	[more]
A0A0D6R6G5_ARACU	1.230e-26	54.44	RRM domain-containing protein n=4 Tax=Araucariacea...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..95 e-value: 9.8E-6 score: 35.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..91 e-value: 1.4E-7 score: 31.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..99 score: 9.576
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..109 e-value: 4.7E-29 score: 102.6
None	No IPR available	PANTHER	PTHR13976:SF22	AT27789P	coord: 19..103
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 19..103
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig13502	contig	H-canaliculatus_F_contig13502:696..2863 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig13502.2843.1	mRNA_H-canaliculatus_F_contig13502.2843.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig13502 696..2884 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig13502.2843.1 ID=prot_H-canaliculatus_F_contig13502.2843.1|Name=mRNA_H-canaliculatus_F_contig13502.2843.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MGGGAGGALGPDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTED
SIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSE
EIMRHMNRT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom