prot_H-canaliculatus_F_contig1347.2819.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1347.2819.1
Unique Nameprot_H-canaliculatus_F_contig1347.2819.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length176
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1347.2819.1 vs. uniprot
Match: D8LC60_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC60_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 4.840e-58
Identity = 109/179 (60.89%), Postives = 128/179 (71.51%), Query Frame = 0 
Query:    1 QFEDTETVAGFKTRVFGHEIGEDQKCRLIAGGKELKDSQQMGFYRLPEDSCLHVMISRKVSSGFAARASPSVASPGASXXXXXXXSRTVSGEAGSAILCALTLGMVIAGWTLFVVFPGLFSSEAISLLVVLTLLQLAATLPLLKKALSVALGACWWR----RPSGDSRISSRVPGRRRQ 175
            QF+D ETVA FKTRVFG  IGE ++CRLIA GKEL+DS +MG YR+ E SC+HVMIS++ S   A R +P  A+   S       SR V   AGSAILCALTLGMV+A WT+++VFP LFS  A  LL++LTLLQLAATLP+LK+ALS ALGACWWR    RPS        VPGRRRQ
Sbjct:   21 QFDDAETVADFKTRVFGDVIGEGKRCRLIASGKELQDSHKMGSYRIQEGSCMHVMISQRGSVAGAERGTPCAAAVPPSAAASTSSSRGVGRGAGSAILCALTLGMVMAAWTVYMVFPELFSCAATCLLLLLTLLQLAATLPILKQALSAALGACWWRPWVRRPSS-------VPGRRRQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1347.2819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC60_ECTSI4.840e-5860.89Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 2..58
e-value: 3.5E-6
score: 26.7
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..61
score: 10.201
NoneNo IPR availableGENE3D3.10.20.90coord: 1..55
e-value: 1.8E-7
score: 32.8
NoneNo IPR availablePANTHERPTHR14557:SF5coord: 5..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..143
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 144..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 120..124
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..119
NoneNo IPR availableTMHMMTMhelixcoord: 97..119
NoneNo IPR availableTMHMMTMhelixcoord: 124..143
IPR040352Transmembrane and ubiquitin-like domain-containing protein 1/2PANTHERPTHR14557PROTEIN C7ORF21coord: 5..134
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 2..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1347contigH-canaliculatus_F_contig1347:13692..15315 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1347.2819.1mRNA_H-canaliculatus_F_contig1347.2819.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1347 13692..15315 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1347.2819.1 ID=prot_H-canaliculatus_F_contig1347.2819.1|Name=mRNA_H-canaliculatus_F_contig1347.2819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=176bp
QFEDTETVAGFKTRVFGHEIGEDQKCRLIAGGKELKDSQQMGFYRLPEDS
CLHVMISRKVSSGFAARASPSVASPGASASAAAASSRTVSGEAGSAILCA
LTLGMVIAGWTLFVVFPGLFSSEAISLLVVLTLLQLAATLPLLKKALSVA
LGACWWRRPSGDSRISSRVPGRRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-like_domsf
IPR040352TMUB1/2
IPR000626Ubiquitin_dom