prot_H-canaliculatus_F_contig1346.2812.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1346.2812.1
Unique Nameprot_H-canaliculatus_F_contig1346.2812.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length178
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1346.2812.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 7.080e-67
Identity = 119/173 (68.79%), Postives = 137/173 (79.19%), Query Frame = 0 
Query:    1 MDGWSDDHVDP----QNPYAPDCASRAAEGFYVGALYGTVWGVLGRASASPISPSTPAMGALRSLSGTAPQSQPA-GLGRREATGYLRAFSRGAAGYGVAAASTAGVFGVFVGVVNAGTCACERFTGKKGWLNSAFGGAAAGLSVALLSRHTRTPPMVAGYVAGSAAITSIVA 168
            M+ W+   V+P       YAPDC+SRAAEGFYVGALYG VWGV+GRA+ +P  PSTPAMG L+  SG   Q+QPA GL  R  +  +RAF RGAAGYG+AAASTAGVFGVFVG+VNAGTC CER  GKK W N+AFGGAAAGLSVALLSRHTRTP M+A +VAG+AAITS+VA
Sbjct:    1 MEDWN---VEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSGL--QAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1346.2812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI7.080e-6768.79Similar to mitochondrial import inner membrane tra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 19..161
e-value: 2.0E-11
score: 44.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 114..124
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..143
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 177..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..176
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 144..154
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 125..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1346contigH-canaliculatus_F_contig1346:19033..21123 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1346.2812.1mRNA_H-canaliculatus_F_contig1346.2812.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1346 18671..22102 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1346.2812.1 ID=prot_H-canaliculatus_F_contig1346.2812.1|Name=mRNA_H-canaliculatus_F_contig1346.2812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
MDGWSDDHVDPQNPYAPDCASRAAEGFYVGALYGTVWGVLGRASASPISP
STPAMGALRSLSGTAPQSQPAGLGRREATGYLRAFSRGAAGYGVAAASTA
GVFGVFVGVVNAGTCACERFTGKKGWLNSAFGGAAAGLSVALLSRHTRTP
PMVAGYVAGSAAITSIVAFATGPPLAS*
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