prot_H-canaliculatus_F_contig13074.2541.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13074.2541.1
Unique Nameprot_H-canaliculatus_F_contig13074.2541.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length276
Homology
BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 8.990e-81
Identity = 190/276 (68.84%), Postives = 195/276 (70.65%), Query Frame = 0
Query:    3 ASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDLSSLKDQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVGAGGGLGSIPGGAAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSMPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFG--VGRGGGGPGHDAERVMSCLQELGSTRALFSRAASDCLEEV 276
            ASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAAS VVNH GNTLGVDLLEALVRK                                   DQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPG SGG+ AG             XXXXXXXX              XXXXXXXXX  G+M +N+CLVYVNTLEACS FAVRLREMLERDASAAFG          GHDAERVMSCLQ LGSTRALF+RAASDCLEEV
Sbjct:  472 ASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK-----------------------------------DQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGVSGGISAGXXXXXXX--XXXXXXXXXXXXRPDASSAMMGGGVSXXXXXXXXXXXGNMNSNECLVYVNTLEACSTFAVRLREMLERDASAAFGGXXXXXXXXAGHDAERVMSCLQGLGSTRALFTRAASDCLEEV 710          
BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-15
Identity = 111/288 (38.54%), Postives = 141/288 (48.96%), Query Frame = 0
Query:    4 SVSKAIAVDEVAP--GAAASSCAEDAFFVAQRCAKRALATG------------HAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGG--GTLDLTIKQLGQIDFTDLSSLKDQLQ--MDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVGAGGGLGSIPGGAAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSMPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFGVGRGGGGPGHDAERVMSCLQELGSTRALFSRAASDCL 273
            S+ KA+A+DEV    G   SSC EDAFFVAQ      L                       +  +G     + LEAL  +V+++L TLP  GG  G LD+ ++QLGQIDF+DL +L  Q Q  +   +G+G  +ASDLTS  T+A++NI   G                     GG    XXXXX  X  XXXXXXX     XXXXXXXXX GG      CLVY+N LEAC   A RL   L R+    F  GRG       A+ +++CL EL      F + +   L
Sbjct:   93 SLRKALAIDEVHGHGGLVTSSCVEDAFFVAQPWLVVVLYKSVDLSXXXXXXXXXXXQLQPQLYQSG-----EFLEALAGQVRASLGTLPGLGGTAGGLDVALRQLGQIDFSDLGNLGAQFQDNLQGLQGIGQNIASDLTSLGTSALTNIPLRG---------------------GGTGXXXXXXXAAXQGXXXXXXXAAGGAXXXXXXXXXTGG---RGACLVYLNDLEACGQCAARLGAELVREVPETFQEGRG-------AQLLLACLGELSGAADAFDQRSQRSL 344          
BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.250e-10
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   26 DAFFVAQRCAKRALATGHAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDLSSLKDQLQMDNWEGMGAGLASD-LTSSATAAISNIR 135
            D F+VAQRCAKRA+ATGH G+ S V+NH  N L  DLL+ L  K+ S +++L        DL   QL Q  +  ++       +D+  GMG  +A+  L   A+AA+S IR
Sbjct:    2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKLSSAINSLAPPA----DLAGSQLQQ-HWRKITG-----GIDSLAGMGIDMANQPLAGVASAAVSRIR 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE8.990e-8168.84Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836C9B0_9STRA1.510e-1538.54Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A7S2V6Z6_9STRA2.250e-1041.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 270..276
NoneNo IPR availablePANTHERPTHR24016:SF0CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4coord: 1..275
NoneNo IPR availablePANTHERPTHR24016FAMILY NOT NAMEDcoord: 1..275
IPR013167Conserved oligomeric Golgi complex, subunit 4PFAMPF08318COG4coord: 3..69
e-value: 7.6E-10
score: 38.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13074contigH-canaliculatus_F_contig13074:155..2711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13074.2541.1mRNA_H-canaliculatus_F_contig13074.2541.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13074 149..2711 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13074.2541.1 ID=prot_H-canaliculatus_F_contig13074.2541.1|Name=mRNA_H-canaliculatus_F_contig13074.2541.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=276bp
MGASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASTV
VNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDL
SSLKDQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVG
AGGGLGSIPGGAAGMMMGGGGPGRPDASSSAMMMGGGAAGGGGGGGVGGS
MPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFGVGRGGGGPGHDAER
VMSCLQELGSTRALFSRAASDCLEEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013167COG_su4