prot_H-canaliculatus_F_contig13.2478.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13.2478.1
Unique Nameprot_H-canaliculatus_F_contig13.2478.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length319
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: A0A6H5LD10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.440e-16
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:  154 PLPFWKS---WGGGGGSSDIEEGRGTKVTASRST---------DAAPSTGESVGYQCQICLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQV 238
            PLP W S   WG  G  S+  EG+   + A             ++  +TG +  Y CQICLDDRPAE GF LSACGH FCR CL+AYV +K+ND +V
Sbjct:   87 PLPKWSSLQFWGTNGPGSEGGEGKVGDLAARDGAGDGGMYLGAESTATTGANRTYHCQICLDDRPAEAGFVLSACGHLFCRECLKAYVTSKINDAEV 183
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: D7FNI4_ECTSI (Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.570e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0 
Query:  199 QICLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQ 237
            +ICLDDRPAE GF LSACGH FCR CL+AYV +K+ND +
Sbjct:    4 EICLDDRPAEAGFVLSACGHVFCRECLKAYVTSKINDAE 42
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: A0A836CCT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.300e-6
Identity = 35/84 (41.67%), Postives = 42/84 (50.00%), Query Frame = 0 
Query:  163 GGGGSSDIEEGRGTKVTA-------SRSTDAAPSTGESVGYQCQICLD-DRPAEEGFALSACGHTFCRACLEAYVANKVNDGQV 238
            G G S  I  G  T +         S S   A + G S  Y CQIC +  R  +  F LSACGHTFC AC+  Y++ KV DGQ 
Sbjct:   42 GAGLSRQISNGLSTAICTLSNGTITSFSNGGALTPGGSDLYYCQICFEYARRGDAAFTLSACGHTFCHACVREYISKKVVDGQT 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LD10_9PHAE5.440e-1647.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNI4_ECTSI9.570e-1071.79Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus s... [more]
A0A836CCT7_9STRA5.300e-641.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 198..249
e-value: 0.0013
score: 28.0
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 197..229
e-value: 4.4E-7
score: 29.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 198..251
score: 9.111
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 192..289
e-value: 1.6E-13
score: 52.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 216..225
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..318
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 196..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13contigH-canaliculatus_F_contig13:1003..2300 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13.2478.1mRNA_H-canaliculatus_F_contig13.2478.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13 937..2428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13.2478.1 ID=prot_H-canaliculatus_F_contig13.2478.1|Name=mRNA_H-canaliculatus_F_contig13.2478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=319bp
MENSLLRTSLLVALLRARRGGPPLLALLQLPAATRRCCCFCCFCCRVFSA
ASCWFSWQQRRRGEQLLRWRRERGGGLWWWTATTLPAMSSTRSGADVGRG
TSTSTSNTSSISSATDSPFERFAAAAAAPATAVAGAAPVSTARQSGVDLT
ESWPLPFWKSWGGGGGSSDIEEGRGTKVTASRSTDAAPSTGESVGYQCQI
CLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQVRGGGPGKSPVAS
CRHRSAVNASHRNASLQASRVLARCPNGEAVKRRRRPALARVLPRRLLCT
RTKVARALGCTGQDGVRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING