prot_H-canaliculatus_F_contig12583.2168.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12583.2168.1
Unique Nameprot_H-canaliculatus_F_contig12583.2168.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length57
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.130e-20
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    2 GGVSVLTSVLDLARAAVCALGPLVSHLERFGLDRSLASPDLTSFSRSQYMTLDAVT 57
            G   VLT VLDL R A+CALGPL++HLERFGLDRSLASPDL+SFS+SQYMTLDAVT
Sbjct:  734 GCAPVLTRVLDLPRPAICALGPLMTHLERFGLDRSLASPDLSSFSKSQYMTLDAVT 789
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BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Match: A0A6H5K0Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:   21 LGPLVSHLERFGLDRSLASPDLTSFSRSQYMTLDAVT 57
            +G L    +RFGLDRSLASPDL+SFS+SQYMTLDAVT
Sbjct:   10 VGALFVFFQRFGLDRSLASPDLSSFSKSQYMTLDAVT 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12583.2168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.130e-2080.36MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K0Q9_9PHAE1.500e-975.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036678MutS, connector domain superfamilyGENE3D3.30.420.110coord: 2..49
e-value: 2.0E-5
score: 26.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.468

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12583contigH-canaliculatus_F_contig12583:1149..1879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12583.2168.1mRNA_H-canaliculatus_F_contig12583.2168.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12583 1147..1879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12583.2168.1 ID=prot_H-canaliculatus_F_contig12583.2168.1|Name=mRNA_H-canaliculatus_F_contig12583.2168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
RGGVSVLTSVLDLARAAVCALGPLVSHLERFGLDRSLASPDLTSFSRSQY
MTLDAVT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036678MutS_con_dom_sf