prot_H-canaliculatus_F_contig12500.2122.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig12500.2122.1
Unique Name	prot_H-canaliculatus_F_contig12500.2122.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	226

Homology

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 1.280e-100
Identity = 191/227 (84.14%), Postives = 200/227 (88.11%), Query Frame = 0

Query:    1 MRMEDSPISVEVPPITPEAAAXXXXXXXXXXXXXXXASDEAVGSAPVSA-ADGAAPTTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            MRME+SP  VEVPP+TPEA  XXXXXXXXXXXXXXX              A+G +P   PE KLDGK+LL ALKKQVEFYFS+QNLQ+DGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESV+DSTVC VT DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTM+SEDDAL TILALRGKTFEGKAIKARLKSENLLRS
Sbjct:    1 MRMENSPGPVEVPPVTPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRS 227

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 1.290e-95
Identity = 188/232 (81.03%), Postives = 197/232 (84.91%), Query Frame = 0

Query:    3 MEDSPISVEVPPITPEAAAXXXXXXXXXXXXXXXASDEAVGSAPVSAA--------DGAAPTTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            ME SP  VEVP +TPEAA XXXXXXXXXXXXXXX                      +G  P   PE KLDGK+LL ALKKQVEFYFS+QNLQ+DGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESV+DSTVC VTPDGIKPSIKQERNTIILREIPS+TPQEKIR+IFTGDGVAPIKSIRSDVGDTWFVTM+SEDDALTTILALRGKTFEGKAIKARLKSENLLRS
Sbjct:    1 MESSPGPVEVPRVTPEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTTPPVVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRS 232

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK)

HSP 1 Score: 216 bits (549), Expect = 3.450e-67
Identity = 110/164 (67.07%), Postives = 133/164 (81.10%), Query Frame = 0

Query:   63 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            L+G+ L EA+KKQ+EFYFSRQNLQTDGFLVSKMNA M VP+ VIA+F KI+ LT +  +I  ++  S VC VT D IKP+ K ERNTIILREIPS TP+EK+REIFTG+G+API +IRSDVGDTWFVT+ SE  A+   LALR + FEG+ +KARLKSENLLR+
Sbjct:   31 LEGEALREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRA 194

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA)

HSP 1 Score: 214 bits (546), Expect = 9.810e-67
Identity = 106/172 (61.63%), Postives = 139/172 (80.81%), Query Frame = 0

Query:   62 KLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQEK-------IREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            +L+GK+L++AL++QVEFYFS+ NLQ+DGFLVS+M+A  CVP++VIAQF K++ LT+D   I  +V +S+VC VTP GI+P++K ER+TIILREIPS+TP  K       +RE+F G+G+API+ +RSDVG TWFVT  SE DA+ TILALR +TFEGK +KARLK ENLLRS
Sbjct:   47 RLEGKELVDALRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRS 218

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A2P4XI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.540e-58
Identity = 104/166 (62.65%), Postives = 133/166 (80.12%), Query Frame = 0

Query:   63 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            L+G +L +A+K+QVEFYFSR NL  D +LVS+MN+QM VPV VI  F KI+QLT +TAL+VE+V+DST+C++  + D IKP+IK ER TIILREIPS T  E++  IF G G   + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct:    9 LEGAELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKS 172

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI)

HSP 1 Score: 195 bits (495), Expect = 1.450e-57
Identity = 107/173 (61.85%), Postives = 133/173 (76.88%), Query Frame = 0

Query:   56 TTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            T APE    G +L EA+K+QVEFYFSR NL  D +LVS+MN+QM VPV VI  F KI+QLT D AL+V++V+DSTVC++  + D IKP+IK ER TIILREIPS T  E++  IF G G   + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G  IKARLKSEN+L+S
Sbjct:    6 TKAPE----GAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKS 172

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A0P1AUF3_PLAHL (La-related protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL)

HSP 1 Score: 191 bits (486), Expect = 1.520e-56
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 0

Query:   59 PEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            P + L+G +L EA+K+QVEFYFSR NL  D +LVS+MN+QM VPV VI  F KI+QLT +T L+VE+V+DSTVC+++   D IKP+IK ER TIILREIPS T  E++  IF   G   +  +RSDVGDTWF+TM SE +A+ T+LALR KT  G AIKARLKSEN+L+S
Sbjct:    5 PVKALEGAELKEAIKRQVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFKDCG--KVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENILKS 172

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: G4YGZ8_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YGZ8_PHYSP)

HSP 1 Score: 197 bits (502), Expect = 2.170e-56
Identity = 103/165 (62.42%), Postives = 130/165 (78.79%), Query Frame = 0

Query:   64 DGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            +G +L EA+K+QVEFYFSR NL  D +LVS+MN+QM VPV VI  F KI+QLT D AL+VE+V+DST+C++    D IKP+IK ER TIILREIPS T  E++  IF  DG   + S+RSDVGDTWFVTM++E +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct:   26 EGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--DGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVLKS 188

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.320e-56
Identity = 108/173 (62.43%), Postives = 132/173 (76.30%), Query Frame = 0

Query:   56 TTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDG--IKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            +TAP   L G  L EALK QVEFYFS+ NL  D FLVS+MN+QM VPV VI  F KI+ LT+D AL+V+S++DSTVC+++P+G  IKP+IK ERNTIILREIPS T  + +  IF G G   + S+RSDVGDTWFVTM +E+DA+ T+LALR KTF    IKARLKSEN+LRS
Sbjct:    2 STAP--TLSGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRS 170

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BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Match: D0NY71_PHYIT (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=D0NY71_PHYIT)

HSP 1 Score: 196 bits (497), Expect = 8.080e-56
Identity = 104/166 (62.65%), Postives = 131/166 (78.92%), Query Frame = 0

Query:   63 LDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTTILALRGKTFEGKAIKARLKSENLLRS 226
            L+G +L EA+K+QVEFYFSR NL  D +LVS+MN+QM VPV VI  F KI QLT +TAL+VE+V++STVC++  + D IKP+IK ER TIILREI S T  E++  IF G G   + S+RSDVGDTWFVTM+SE +A++T+LALR KTF G AIKARLKSEN+L+S
Sbjct:    9 LEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKITQLTDNTALLVEAVQESTVCSLNSSKDAIKPNIKSERTTIILREISSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKS 172

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig12500.2122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LL21_ECTSI	1.280e-100	84.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KRS0_9PHAE	1.290e-95	81.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S4DKN7_HETAK	3.450e-67	67.07	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A836CHL1_9STRA	9.810e-67	61.63	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A2P4XI52_9STRA	9.540e-58	62.65	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A0W8DNS3_PHYNI	1.450e-57	61.85	Ammonium Transporter (Amt) Family n=1 Tax=Phytopht...	[more]
A0A0P1AUF3_PLAHL	1.520e-56	60.00	La-related protein 4 n=1 Tax=Plasmopara halstedii ...	[more]
G4YGZ8_PHYSP	2.170e-56	62.42	Uncharacterized protein n=5 Tax=Phytophthora TaxID...	[more]
A0A024TXK9_9STRA	2.320e-56	62.43	HTH La-type RNA-binding domain-containing protein ...	[more]
D0NY71_PHYIT	8.080e-56	62.65	Uncharacterized protein n=9 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 66..146 e-value: 2.7E-20 score: 83.4
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 72..127 e-value: 4.0E-19 score: 68.4
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 62..151 score: 19.706
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 150..222 e-value: 1.9E-5 score: 26.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 56..149 e-value: 8.4E-26 score: 91.5
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 37..197
None	No IPR available	PANTHER	PTHR22792:SF76	LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOG	coord: 37..197
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 148..221 score: 9.866
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 134..219
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 65..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig12500	contig	H-canaliculatus_F_contig12500:1344..3626 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig12500.2122.1	mRNA_H-canaliculatus_F_contig12500.2122.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig12500 1344..3626 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig12500.2122.1 ID=prot_H-canaliculatus_F_contig12500.2122.1|Name=mRNA_H-canaliculatus_F_contig12500.2122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=226bp
MRMEDSPISVEVPPITPEAAAAAAAAPASAAAGAAGASDEAVGSAPVSAA
DGAAPTTAPEEKLDGKDLLEALKKQVEFYFSRQNLQTDGFLVSKMNAQMC
VPVAVIAQFHKIQQLTSDTALIVESVRDSTVCAVTPDGIKPSIKQERNTI
ILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMDSEDDALTT
ILALRGKTFEGKAIKARLKSENLLRS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR036388	WH-like_DNA-bd_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR006630	La_HTH