prot_H-canaliculatus_F_contig12450.2081.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig12450.2081.1
Unique Name	prot_H-canaliculatus_F_contig12450.2081.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	115

Homology

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BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.510e-32
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 0

Query:    5 FQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYPVVLIYLACIIRVLSELVISVLLVPSLLAK-QEPGGAGRGGQSVNGGDADLAAYGVSGGDDAGTVV 114
            FQG+ + RRLHFV QV+NVVW TLVLF + +  +  GI++ I+VYP+ + Y+AC +R++SEL +SVLL+PSLLAK Q  GG G   + V  GDADLAAYGVSG DDAGT+V
Sbjct:   32 FQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142

[Close]

BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Match: A0A6H5L548_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.850e-30
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 0

Query:    5 FQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYPVVLIYLACIIRVLSELVISVLLVPSLLAK-QEPGGAGRGGQSVNGGDADLAAYGVSGGDDAGTVV 114
            FQG+ + RRLH+VAQV+NVVW TLVL +VF+  +   I++ I++YP+ + Y+AC +R++SEL +SVLL+PSLLAK Q  GG G   + V  GDADLAAYGVSG D AGT+V
Sbjct:   32 FQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig12450.2081.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LQA9_ECTSI	1.510e-32	59.46	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L548_9PHAE	2.850e-30	57.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..63
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 64..114
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..13
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..34
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..39
None	No IPR available	TMHMM	TMhelix		coord: 41..63
None	No IPR available	TMHMM	TMhelix		coord: 15..34

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig12450	contig	H-canaliculatus_F_contig12450:3196..3540 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig12450.2081.1	mRNA_H-canaliculatus_F_contig12450.2081.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig12450 3196..3555 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig12450.2081.1 ID=prot_H-canaliculatus_F_contig12450.2081.1|Name=mRNA_H-canaliculatus_F_contig12450.2081.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MLLQFQGVFVMRRLHFVAQVFNVVWCTLVLFSVFQHESVGGIVIGIVVYP
VVLIYLACIIRVLSELVISVLLVPSLLAKQEPGGAGRGGQSVNGGDADLA
AYGVSGGDDAGTVV*