prot_H-canaliculatus_F_contig1234.1998.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1234.1998.1
Unique Nameprot_H-canaliculatus_F_contig1234.1998.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length1304
Homology
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Match: A0A6H5KB32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB32_9PHAE)

HSP 1 Score: 597 bits (1538), Expect = 2.930e-192
Identity = 408/787 (51.84%), Postives = 464/787 (58.96%), Query Frame = 0
Query:  381 KEEGA--ARLHAYQLVSGEPRLLLLLRPGAAPDLLAARLRFLLDSLPGLRGSDDCCRCCWNAGAPLKRAAPLLAIDSATLGRRLEGLAEILPPTVDAQQ--------AIVNQAPLLLRQSTEALSEALVSTERLIPGLRMDRVLRSAPHLLVQPLDLVERRLAHLREVLGLTPSPELERMRIAAEAQQITTITXXXXXXX-----------------------------RRLARFANAFPQILTMDPNTVQAKIEGLEDLLPGVDGLAVVSSRPQLLGFDVWRNVSLKVSRLKELMTRARVRQGPDVPRHQQRLQEQLHEHQEQGQRGMHQDGSKLEGLRGQGRGRQRGRHLIILPSD-TTASDDLAAAVTRCPSLLTLSSDTTMRKVQEFQEALPSGLDARTIVAKEPRVLALDMGSTVPRKLQDLARAFGEHASYPVTTAGASGDGXXXXXXXRGGDTGTGRVEEAGGATAETAVAAAAIADGVMAQVLRYFPNALRFEPATLARKLEALQRAGLSPEMALEVIGGAPRCLSVAEGTLERRVSALREAFPSVPLSRLLGEAPCLLQNRIDPAAKVEVLQELFPSSDPVSLVEGAPMLLALSPRTLRVKSDAWRHILEDRIDVSWEQTVAEFPQLLCQGLGRAARVAFLLL-------------------AADDERATS-----VTAAANEDKLVESTPLPSY----FRVGDGDNAGVNAAXXXXXXXXXXXXXXXXXXXXXXXXXX--KRMSAAAACGEICRRVSDFESDHPSYPAFLGSLLLAA 1097
            +E+G   ARLHAYQLVS EPRLLLL    A P+L + RLRFLL+ LP LRGS       W+A   L+RAAPLLAI+S+ L  RLEGLA++ PP  D Q         AIVNQ PLLLR  TE +SEAL + ERL+PGLRMDRVLRSAP LLVQPLD+VE+RLA LR VL LTPSPE+ERMRI  E    + ++                                    RRLARFAN FPQILTM+P+TV+AKIEGLE LLPG+DGLA+V SRP LLGFDV RNVSLKVSRL+ELM                 + + L   Q +GQ    Q+ S + G      G  R R   +L +  T ASDDL AAV RCPSLLTLSS+T+MRKV++ QEALPSGL ARTIVAKEPRV++LDM STVPRKL DL+ AF E A             XXXXXXX                              +MAQ LRY PNALRF+PATLARKLE L+ AGLS E    V+GGAPRCLS A GTLE RVSALREAFPSVPLSRLLGEAPCLLQ  IDP AK                     MLLALS +TLRVK DAWR I+EDR+DV WEQ VA+FPQLLCQG GRAARV FLLL                       ER  +     V A    D+++ +T  P         GDG  A   AA                            + MSAAAAC E+CRRVSDFESDHP YP FL SLL+AA
Sbjct:   62 REQGGEGARLHAYQLVSSEPRLLLL---RAEPEL-SGRLRFLLEMLPSLRGS-------WSAR--LRRAAPLLAIESSALQSRLEGLADLFPPDADLQVGAGLFIGGAIVNQTPLLLRHRTEKVSEALANIERLVPGLRMDRVLRSAPQLLVQPLDVVEKRLAQLRAVLCLTPSPEVERMRITLEPNNSSDVSIESDSGSGRRGGGDRDDDIGSRGGGRVGGGGRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELM-----------------MDQSLAPQQRRGQ----QETSTMVG------GALRLRTFFLLRAKGTDASDDLVAAVARCPSLLTLSSNTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSHAFAELAGGXXXXXXXXXXXXXXXXXXX------------------------XXXXXMMAQTLRYNPNALRFDPATLARKLEVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKXXXXXXXXXXXXXXXXXXXXXMLLALSEKTLRVKRDAWRSIVEDRVDVPWEQVVADFPQLLCQGFGRAARVPFLLLDXXXXXXXXXXXXXXXXXXXXXGERVVTTAVAMVAAGGLGDEVLRATHAPGVASDGVAAGDGVGAAAAAAAGGDSWRSGVGKERSAGGGVDGGSGVAPRTMSAAAACREVCRRVSDFESDHPGYPCFLDSLLVAA 784          
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Match: D7G2Q0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q0_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 6.500e-113
Identity = 241/421 (57.24%), Postives = 269/421 (63.90%), Query Frame = 0
Query:  586 MDPNTVQAKIEGLEDLLPGVDGLAVVSSRPQLLGFDVWRNVSLKVSRLKELMTRARVRQGPDVPRHQQRLQEQLHEHQEQGQRGMHQDGSKLEGLRGQGRGRQRGRHLIILPSDTTASDDLAAAVTRCPSLLTLSSDTTMRKVQEFQEALPSGLDARTIVAKEPRVLALDMGSTVPRKLQDLARAFGEHASYPVTTAGASGDGXXXXXXXRGGDTGTGRVEEAGGATAETAVAAAAIADGVMAQVLRYFPNALRFEPATLARKLEALQRAGLSPEMALEVIGGAPRCLSVAEGTLERRVSALREAFPSVPLSRLLGEAPCLLQNRIDPAAKVEVLQELFPSSDPVSLVEGAPMLLALSPRTLRVKSDAWRHILEDRIDVSWEQTVAEFPQLLCQGLGRAARVAFLLLAADDERATSVTAAA 1006
            M+P+TV+AKIEGLE LLPG+DGLA+V SRP LLGFDV RNVSLKVSRL+ELM                 + + L   Q +GQ+               GRG+Q   ++    + T ASDDL AAV RCPSLLTLSSDT+MRKV++ QEALPSGL ARTIVAKEPRV++LDM STVPRKL DLARAF EHA             XXXXXXX                              +MAQ LRY PNALRF+PATLARKL  L+ AGLS E    V+GGAPRCLS A GTLE RVSALREAFPSVPLSRLLGEAPCLLQ  IDP AK+                    MLLALS  TLRVK DAWR ILE+R+DV WEQ VA+FPQLLCQGLGRAARV FLLL  DD  A + T  A
Sbjct:    1 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELM-----------------MDQSLPPQQRRGQQ--------------PGRGQQETSNMA---NGTDASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMTSTVPRKLADLARAFTEHAGGXXXXXXXXXXXXXXXXXXXXXXV-------------------------MMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXXXXMLLALSENTLRVKRDAWRSILENRVDVPWEQVVADFPQLLCQGLGRAARVPFLLL--DDPPAVASTTMA 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB32_9PHAE2.930e-19251.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Q0_ECTSI6.500e-11357.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 574..604
e-value: 1500.0
score: 2.5
coord: 828..858
e-value: 150.0
score: 10.3
coord: 608..639
e-value: 780.0
score: 4.7
coord: 707..737
e-value: 390.0
score: 7.1
coord: 511..542
e-value: 450.0
score: 6.5
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 819..1011
e-value: 2.5E-7
score: 32.1
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 199..635
coord: 703..985
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..1303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1234contigH-canaliculatus_F_contig1234:11935..19752 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1234.1998.1mRNA_H-canaliculatus_F_contig1234.1998.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1234 10648..19775 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1234.1998.1 ID=prot_H-canaliculatus_F_contig1234.1998.1|Name=mRNA_H-canaliculatus_F_contig1234.1998.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1304bp
MEPGKRRRPWGRQPSGSAGSAAAVAAAAAFALAAISVPKTDALYVSHLPV
ALSNPRSSFSPASGRGRGGRGRSAKAAAASSTAECRRKERHRRKAPALSG
TSGSGGAAPAADTSDHPLPLSPSCDSQQHERRSSNSNSSGDAAAAAVAAE
AAATTENSTPIQNSGRVVVGTVFRPPPRNGSGGARSSGTTRTRTTIASST
RELQGPRRTPSVRCAENIATTSRDKSIDYASARKKRFERKRENDVRMFFR
ERGLSKWEVRKVLAVVRKDPELMSDIGVLAARMQAIADLLEAAGSWYAPA
EGSATVIPQSRRSPEDVQARVLPSPQATHVRRSSPPETAASDSSVGGTCG
SRMGSQGSRTSTGQQKQDDGITFRAATSAAKEEGAARLHAYQLVSGEPRL
LLLLRPGAAPDLLAARLRFLLDSLPGLRGSDDCCRCCWNAGAPLKRAAPL
LAIDSATLGRRLEGLAEILPPTVDAQQAIVNQAPLLLRQSTEALSEALVS
TERLIPGLRMDRVLRSAPHLLVQPLDLVERRLAHLREVLGLTPSPELERM
RIAAEAQQITTITSGGGGGGRRLARFANAFPQILTMDPNTVQAKIEGLED
LLPGVDGLAVVSSRPQLLGFDVWRNVSLKVSRLKELMTRARVRQGPDVPR
HQQRLQEQLHEHQEQGQRGMHQDGSKLEGLRGQGRGRQRGRHLIILPSDT
TASDDLAAAVTRCPSLLTLSSDTTMRKVQEFQEALPSGLDARTIVAKEPR
VLALDMGSTVPRKLQDLARAFGEHASYPVTTAGASGDGGDDDDDDRGGDT
GTGRVEEAGGATAETAVAAAAIADGVMAQVLRYFPNALRFEPATLARKLE
ALQRAGLSPEMALEVIGGAPRCLSVAEGTLERRVSALREAFPSVPLSRLL
GEAPCLLQNRIDPAAKVEVLQELFPSSDPVSLVEGAPMLLALSPRTLRVK
SDAWRHILEDRIDVSWEQTVAEFPQLLCQGLGRAARVAFLLLAADDERAT
SVTAAANEDKLVESTPLPSYFRVGDGDNAGVNAAAGVGGDGGGGGHDGDS
SSGSSGTGVGKRMSAAAACGEICRRVSDFESDHPSYPAFLGSLLLAATSR
RAAVTIASRGADTDMVLASPAAERVLWRRDSGSRAGAAAARGAGQRHRPP
SSVDAGAGACAAAEAGVGTADEAKVAMAAAAEPAFAAAAAASDRETELVA
LPQLLSAAGNEFREQQVQQQHHFNRRMSSDRPRATPVAPVPSCFAPPVPA
SLPASPPQTSTPMIAVRSEKALSAAMAAAARGRGGGREAAAMLFPDERTP
PPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF