prot_H-canaliculatus_F_contig11929.1690.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig11929.1690.1
Unique Name	prot_H-canaliculatus_F_contig11929.1690.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	168

Homology

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.700e-76
Identity = 108/119 (90.76%), Postives = 115/119 (96.64%), Query Frame = 0

Query:   49 PPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 167
            P G ESTCGK+CG+ECDNNR+YVSGLPTTITE+DLV+KFS+IGIIARIRQ KRGYKDQWPFSVRIYKDD+TGKPKGDCIIKYEE NSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:   41 PAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ-KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 8.620e-73
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0

Query:   49 PPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQ---QKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 167
            P G ESTCGK+CG+ECDNNR+YVSGLPTTITE+DLVDKFS+IGIIARIRQ    KRGYKDQWPFSVRIYKD +TGKPKGDCIIKYEE NSAHAA+RWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:  225 PAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 126 bits (317), Expect = 2.050e-33
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 0

Query:   47 AAPPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            +A P     C + CG+ CDN+RIY+S LP  +   +L + F SIGI+ARI+Q KRGYKDQWP+S+++Y DDS GK KGD ++ YE+ ++AH+A  +F+G D +G KI V MA K
Sbjct:   93 SAEPPKVKQCDENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 126 bits (317), Expect = 4.190e-32
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 0

Query:   47 AAPPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            +A P     C + CG+ CDN+RIY+S LP  +   +L + F SIGI+ARI+Q KRGYKDQWP+S+++Y DDS GK KGD ++ YE+ ++AH+A  +F+G D +G KI V MA K
Sbjct:  192 SAEPPKVKQCDENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 303

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: UPI00053F9F2B (transcription initiation factor TFIID subunit 15b n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F9F2B)

HSP 1 Score: 127 bits (318), Expect = 1.650e-31
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 0

Query:   47 AAPPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            A PP     C + CG+ CDN+RIY+S LP  ++  +L D F +IG +ARI+Q KRGYKDQWP+S+++Y DD+ GK KGD ++ YE+ ++AHAA  +F+G D +G KI VAMA K
Sbjct:  297 ADPPAKVKQCDENCGDSCDNSRIYISNLPPDVSIDELRDLFGNIGTVARIKQ-KRGYKDQWPWSIKLYTDDN-GKNKGDGVLSYEDPSAAHAAGGFFNGHDIRGYKINVAMAEK 408

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9)

HSP 1 Score: 122 bits (307), Expect = 1.400e-30
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 0

Query:   47 AAPPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            A  P     C + CG+ CDN+RIY+S LP  +T  +L + F SIG +ARI+Q KRGYKDQWP+S++IY D+  G  KGD ++ YE+ ++AH+A  +F+  DF+G KI VAMA K
Sbjct:  196 AEAPAKVKQCDEHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ-KRGYKDQWPWSIKIYTDEK-GNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEK 307

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A0K9QQJ8_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9QQJ8_SPIOL)

HSP 1 Score: 124 bits (311), Expect = 1.580e-30
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 0

Query:   47 AAPPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            +A P     C + CG+ CDN+RIY+S LP  +   +L + F SIG +ARI+Q KRGYKDQWP+S+++Y DDS GK KGD ++ YE+ ++AH+A  +F+G D +G KI V+MA K
Sbjct:  295 SAEPAKVKQCDENCGDSCDNSRIYISNLPPDVAVEELRELFGSIGTVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSAGGFFNGHDIRGYKINVSMAEK 406

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 122 bits (305), Expect = 2.050e-30
Identity = 54/105 (51.43%), Postives = 79/105 (75.24%), Query Frame = 0

Query:   56 CGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            C + CG+ CDN RIY+SGLP  + E +L + F  IG +AR++Q KRGYKDQWP++++IY+D+S GK KGD ++ YE+ ++AH+A  +F+  + +G KI VAMAAK
Sbjct:  198 CDENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 122 bits (305), Expect = 2.170e-30
Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = 0

Query:   56 CGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAK 160
            C + CG+ CDN RIY+SGLP  + E +L + F  IG +ARI+Q KRGYKDQWP++++IY+D+S GK KGD ++ YE+ ++AH+A  +F+  + +G KI VAMAAK
Sbjct:  201 CDENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303

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BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Match: A0A804L947_MUSAM (Uncharacterized protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804L947_MUSAM)

HSP 1 Score: 122 bits (307), Expect = 5.780e-30
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 0

Query:   48 APPGAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQKRGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKGGKIGVAMAAKPSL 163
            APP A   C + CGE CDN RIY+S LP  +T  DL D F  IG + RI+Q KRGYKDQWP++++IY D+  G  KGD ++ YE+  +AH+A  +++  D +G KI VAMA K +L
Sbjct:  289 APPVAVKQCDENCGESCDNTRIYISNLPPDVTTEDLHDLFGGIGQVGRIKQ-KRGYKDQWPWNIKIYTDEY-GNNKGDAVLSYEDPAAAHSAGGFYNKYDMRGYKINVAMAEKTAL 402

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig11929.1690.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LIQ1_ECTSI	2.700e-76	90.76	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L8L8_9PHAE	8.620e-73	87.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A803KS81_CHEQI	2.050e-33	50.88	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A803LCU5_CHEQI	4.190e-32	50.88	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
UPI00053F9F2B	1.650e-31	51.75	transcription initiation factor TFIID subunit 15b ...	[more]
UPI000905CCC9	1.400e-30	50.00	transcription initiation factor TFIID subunit 15b-...	[more]
A0A0K9QQJ8_SPIOL	1.580e-30	50.00	Uncharacterized protein n=3 Tax=Chenopodioideae Ta...	[more]
A9T0V1_PHYPA	2.050e-30	51.43	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A0A2K1JP98_PHYPA	2.170e-30	52.38	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
A0A804L947_MUSAM	5.780e-30	50.00	Uncharacterized protein n=2 Tax=Musa acuminata sub...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 68..156 e-value: 1.5E-9 score: 47.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..97 e-value: 1.7E-4 score: 21.3 coord: 110..152 e-value: 7.3E-5 score: 22.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 67..160 score: 13.089
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 60..166 e-value: 1.9E-18 score: 68.7
IPR033109	RNA-binding protein EWS	PANTHER	PTHR23238:SF3	RNA-BINDING PROTEIN EWS	coord: 11..164
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 11..164
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 18..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig11929	contig	H-canaliculatus_F_contig11929:523..3807 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig11929.1690.1	mRNA_H-canaliculatus_F_contig11929.1690.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig11929 523..3807 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig11929.1690.1 ID=prot_H-canaliculatus_F_contig11929.1690.1|Name=mRNA_H-canaliculatus_F_contig11929.1690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MENLALLLPRSPPRRRERSRSRSRDRGGGGGGGGGGGGGGGGGYEDAAPP
GAESTCGKECGEECDNNRIYVSGLPTTITESDLVDKFSSIGIIARIRQQK
RGYKDQWPFSVRIYKDDSTGKPKGDCIIKYEEANSAHAALRWFDGIDFKG
GKIGVAMAAKPSLNNRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034870	TET_fam
IPR033109	EWSR1
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom