prot_H-canaliculatus_F_contig11231.1111.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig11231.1111.1
Unique Nameprot_H-canaliculatus_F_contig11231.1111.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length176
Homology
BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.210e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    2 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRL 38
            GGALGRRKAW ARRRVPVP HRRRRCLGAAVEYA+RL
Sbjct:  282 GGALGRRKAWGARRRVPVPTHRRRRCLGAAVEYALRL 318          
BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.460e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0
Query:    2 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRLARTAD 43
            GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYA+ +    +
Sbjct:  266 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYALSMGNPTN 307          
BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: D7U2U3_VITVI (Protein transport protein SEC23 n=4 Tax=Vitis TaxID=3603 RepID=D7U2U3_VITVI)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-6
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 0
Query:   16 RVPVPAHRRRRCLGAAVEYAVRLARTADRP-----------TSRLLVCLGGCPNFGPGAVAPCVPGAAAAEVDPEALAAATDYFEDLGEKALLQGAGVDVFCASSEGLGAAALQGLVAPTSGYVVIQPSFGEEFAGNLAKSVAEQTMSDGDGLHGCVIDVRASAGVELLHVI 176
            ++ +P   R RCLG AVE A+R+ +                 SR++VC GG   +GPG+V    P + +    P    +A  + E LG++A  Q   VD+ CA +  +    LQ L   + G +V+   FGE F  NL ++          G HG + ++R S  + +  V+
Sbjct:  377 KLNLPEASRDRCLGTAVEVALRIIQGPSAEISRGIVKRSGGNSRIIVCAGGPNTYGPGSV----PHSLSHPNYPHMEKSALKWMEHLGQEAHRQNTVVDILCAGTCPVRVPILQPLAKASGGALVLHDDFGEAFGVNLQRASTRAA-----GSHG-LFEIRCSDDILITQVV 538          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE1.210e-1091.89Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D8LGM0_ECTSI1.460e-1080.95Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D7U2U3_VITVI1.060e-629.07Protein transport protein SEC23 n=4 Tax=Vitis TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006896Sec23/Sec24, trunk domainPFAMPF04811Sec23_trunkcoord: 21..137
e-value: 2.8E-12
score: 46.8
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 9..153
e-value: 3.1E-20
score: 74.5
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 20..137
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 17..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11231contigH-canaliculatus_F_contig11231:216..3251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11231.1111.1mRNA_H-canaliculatus_F_contig11231.1111.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig11231 216..3252 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig11231.1111.1 ID=prot_H-canaliculatus_F_contig11231.1111.1|Name=mRNA_H-canaliculatus_F_contig11231.1111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=176bp
SGGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRLARTADRPTSRLL
VCLGGCPNFGPGAVAPCVPGAAAAEVDPEALAAATDYFEDLGEKALLQGA
GVDVFCASSEGLGAAALQGLVAPTSGYVVIQPSFGEEFAGNLAKSVAEQT
MSDGDGLHGCVIDVRASAGVELLHVI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037364Sec23
IPR036465vWFA_dom_sf
IPR006896Sec23/24_trunk_dom