prot_H-canaliculatus_F_contig11168.1051.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig11168.1051.1
Unique Nameprot_H-canaliculatus_F_contig11168.1051.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length109
Homology
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A6H5JEL3_9PHAE (Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEL3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 5.370e-53
Identity = 87/103 (84.47%), Postives = 99/103 (96.12%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SGQ+PETPVVSKKSGH+YEKRLI+KYIDAEGKCPATGEELTA+DLL+VRS+ AVKPRP EAASIPG L+ +QNEWDDLMLET+TLKQHL+QTRQELSQ+LYQ
Sbjct:    5 ISGQTPETPVVSKKSGHIYEKRLIVKYIDAEGKCPATGEELTADDLLDVRSEGAVKPRPAEAASIPGLLSFLQNEWDDLMLETYTLKQHLNQTRQELSQSLYQ 107          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A835YI40_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI40_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.300e-44
Identity = 74/103 (71.84%), Postives = 90/103 (87.38%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SG+ PE PVVS+K+GH++E+RLI KYIDAEGKCP TGE L  +DL++V+S+K V+PRP  A SIPG LA+MQNEWDDLM+ET+TLKQHLD TRQELSQALYQ
Sbjct:    5 ISGEVPEVPVVSRKTGHLFERRLIEKYIDAEGKCPITGEPLGVDDLMDVKSNKVVRPRPATATSIPGLLALMQNEWDDLMVETYTLKQHLDTTRQELSQALYQ 107          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A7S4CCV9_9EUGL (Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CCV9_9EUGL)

HSP 1 Score: 143 bits (360), Expect = 3.150e-38
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            ++G SPE PVVSKK+GH++EKR+I KYI   GKCP T EEL+ EDLL V S KA KPRP +A+SIPG L++ QNEWD +M+E+FT+KQHLD  RQELS ALYQ
Sbjct:    5 ITGTSPEEPVVSKKTGHLFEKRVIEKYIQQHGKCPVTDEELSTEDLLVVHSSKAPKPRPAQASSIPGLLSLFQNEWDSVMVESFTMKQHLDTVRQELSHALYQ 107          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: UPI00051C4BE2 (pre-mRNA-processing factor 19 homolog 1-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C4BE2)

HSP 1 Score: 132 bits (333), Expect = 5.670e-38
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQVK 105
            +SG+ PE PVVSKKSG ++EKRLI ++I   GKCP TGE LTA+D++ V++ K VKPRPV+AASIPG L M Q EWD LML  F L+Q L   RQELS ALYQVK
Sbjct:    5 ISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQVK 109          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A7S1C5N2_9STRA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5N2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 7.670e-38
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SG  PE PVVS+ +GH+YEKRLI K I A G+CP + EE+ A+DL++V++ K++KPRP  A S+PG L+++Q+EWD  MLE  TL+QHLD TRQELSQALYQ
Sbjct:   12 ISGTVPEEPVVSRTTGHLYEKRLITKAIAATGRCPVSNEEIDADDLVDVKAAKSIKPRPASATSVPGLLSILQDEWDATMLEVATLRQHLDSTRQELSQALYQ 114          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A6U8B0X1_9EUGL (Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8B0X1_9EUGL)

HSP 1 Score: 141 bits (356), Expect = 1.260e-37
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            VSG SPE PVVS+K+GH++EKR+I KYI   GKCP T +ELT +DLL V S K  KPRP +A+SIPG L++ QNEWD LM+E++T+KQHLD  RQELS ALYQ
Sbjct:   10 VSGISPEEPVVSRKTGHLFEKRIIEKYIQQHGKCPVTDQELTMDDLLSVESSKTPKPRPAQASSIPGLLSLFQNEWDSLMIESYTMKQHLDTVRQELSHALYQ 112          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A6V1T7M8_HETAK (Pre-mRNA-processing factor 19 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T7M8_HETAK)

HSP 1 Score: 140 bits (354), Expect = 2.360e-37
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SG+ P+ PV+S KSGH++EK LI KY+ +E  CP TG+EL+ EDL +V+ +KAVKPRP+ A SIPG L + QNEWDDLMLET TLK HLD TRQ+LSQALYQ
Sbjct:    5 ISGEVPKVPVISVKSGHLFEKHLIEKYLKSESTCPVTGDELSIEDLKDVKVNKAVKPRPLTATSIPGLLNLFQNEWDDLMLETHTLKSHLDSTRQQLSQALYQ 107          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: D8M7F8_BLAHO (Pre-mRNA-processing factor 19 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7F8_BLAHO)

HSP 1 Score: 140 bits (352), Expect = 3.380e-37
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SG+ P  PVVSKK+G++YEK LI KYI+AEGKCP TGEEL   DL++V++   VKP+P  A SIPG L  +QNEWD +MLE+FTLK+HL   RQELSQALYQ
Sbjct:    5 ISGEVPHEPVVSKKTGYIYEKSLITKYIEAEGKCPITGEELDLSDLIDVKTQPLVKPKPTPATSIPGLLVSLQNEWDSMMLESFTLKKHLQAVRQELSQALYQ 107          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A444FYR8_ENSVE (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FYR8_ENSVE)

HSP 1 Score: 127 bits (320), Expect = 5.080e-36
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            VSG+ PE PVVSKKSG ++E+RLI  +I + GKCP T E+LT +DL+ V+++K VKPRP++AASIPG L M QNEWD LML  F L+Q L   RQELS ALYQ
Sbjct:   12 VSGEVPEEPVVSKKSGLLFERRLIEHHITSHGKCPVTKEDLTTDDLVLVKTNKVVKPRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQ 114          
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Match: A0A7S2DSX7_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSX7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.900e-35
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVRSDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQALYQ 103
            +SG+ P  PVVS+K+GH++EKRL+ +++ +E KCP TGE LT +DLL V++ +  KPRP+ A SIPG L+  QNEWD +MLET+TLKQHLD TR+ELSQ LYQ
Sbjct:   20 ISGEVPSDPVVSRKTGHLFEKRLVEQFLSSEDKCPVTGEPLTVDDLLPVQATQTTKPRPITATSIPGLLSHFQNEWDTVMLETYTLKQHLDNTRKELSQVLYQ 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11168.1051.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL3_9PHAE5.370e-5384.47Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus T... [more]
A0A835YI40_9STRA9.300e-4471.84Pre-mRNA-processing factor 19 n=1 Tax=Tribonema mi... [more]
A0A7S4CCV9_9EUGL3.150e-3866.02Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella... [more]
UPI00051C4BE25.670e-3863.81pre-mRNA-processing factor 19 homolog 1-like n=1 T... [more]
A0A7S1C5N2_9STRA7.670e-3860.19Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=B... [more]
A0A6U8B0X1_9EUGL1.260e-3765.05Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella... [more]
A0A6V1T7M8_HETAK2.360e-3765.05Pre-mRNA-processing factor 19 n=1 Tax=Heterosigma ... [more]
D8M7F8_BLAHO3.380e-3764.08Pre-mRNA-processing factor 19 n=1 Tax=Blastocystis... [more]
A0A444FYR8_ENSVE5.080e-3662.14Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=E... [more]
A0A7S2DSX7_9STRA1.900e-3560.19Pre-mRNA-processing factor 19 n=1 Tax=Dictyocha sp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U box domainSMARTSM00504Ubox_2coord: 2..62
e-value: 2.5E-8
score: 43.7
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..66
score: 19.427
IPR013915Pre-mRNA-splicing factor 19PFAMPF08606Prp19coord: 62..103
e-value: 4.5E-20
score: 71.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..52
e-value: 1.7E-17
score: 64.6
IPR038959Pre-mRNA-processing factor 19PANTHERPTHR43995FAMILY NOT NAMEDcoord: 1..103
NoneNo IPR availablePANTHERPTHR43995:SF1PRE-MRNA-PROCESSING FACTOR 19coord: 1..103
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11168contigH-canaliculatus_F_contig11168:917..2291 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11168.1051.1mRNA_H-canaliculatus_F_contig11168.1051.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig11168 917..2291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig11168.1051.1 ID=prot_H-canaliculatus_F_contig11168.1051.1|Name=mRNA_H-canaliculatus_F_contig11168.1051.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
VSGQSPETPVVSKKSGHVYEKRLIIKYIDAEGKCPATGEELTAEDLLEVR
SDKAVKPRPVEAASIPGQLAMMQNEWDDLMLETFTLKQHLDQTRQELSQA
LYQVKIRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038959Prp19
IPR013083Znf_RING/FYVE/PHD
IPR013915Pre-mRNA_splic_Prp19
IPR003613Ubox_domain