prot_H-canaliculatus_F_contig10816.772.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10816.772.1
Unique Nameprot_H-canaliculatus_F_contig10816.772.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length127
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10816.772.1 vs. uniprot
Match: A0A6H5K9V4_9PHAE (TFIID_20kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.730e-24
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0 
Query:   20 AAKSMPVMKPLHPVVVPPVEPEPKEAKLVGPMNGVRLPALMEEVDPAYTLHADTEEVLARLPQ 82
            AAKSM  MKPLHPVVVPPVEPEPKEAKLVGPMNG+RLPALM+EVDPAY+LH DTEE+L  L Q
Sbjct:  383 AAKSMAAMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYSLHPDTEELLLALAQ 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10816.772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9V4_9PHAE8.730e-2484.13TFIID_20kDa domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..126
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10816contigH-canaliculatus_F_contig10816:255..1492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10816.772.1mRNA_H-canaliculatus_F_contig10816.772.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10816 201..1695 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10816.772.1 ID=prot_H-canaliculatus_F_contig10816.772.1|Name=mRNA_H-canaliculatus_F_contig10816.772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MLAVADAVAAAVAAGGGSAAAKSMPVMKPLHPVVVPPVEPEPKEAKLVGP
MNGVRLPALMEEVDPAYTLHADTEEVLARLPQSPVHCPPSPVLADPCLSP
CLSCVVQRCATLPPHVSYGKGTPVCR*
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