prot_H-canaliculatus_F_contig10097.123.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10097.123.1
Unique Nameprot_H-canaliculatus_F_contig10097.123.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length352
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 3.190e-48
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0 
Query:    1 QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLLDEMRDRGVAADETVKRALGLVQMMRSEGLAPTEMTYNSLLRLCGLSGCWATGLEL 105
            +VRKRWGFKA LFLIQEMRD  L+I LVHYRGAVTACALT+QL+GVLPLLDEMRDRGVAAD  VKRALGLVQMMRSEGLAPT +TYN LLRLCGL GCWATGLEL
Sbjct:   64 KVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAAD-VVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 167
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BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.090e-41
Identity = 92/162 (56.79%), Postives = 98/162 (60.49%), Query Frame = 0 
Query:    1 QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLLDEMRDRGVAADET---------------------------------------------------------VKRALGLVQMMRSEGLAPTEMTYNSLLRLCGLSGCWATGLEL 105
            +VRKRWGFKAALFLIQEMR+A L+I LVHYRGAVTACALT+QL+GVLPLLDEMRDRGVAAD                                                           VKRALGLVQMMRSEGLAPT +TYN LLRLCGL GCWATGLEL
Sbjct:  315 KVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY15_ECTSI3.190e-4886.67PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE2.090e-4156.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 246..296
e-value: 5.7E-9
score: 35.9
coord: 65..94
e-value: 0.0012
score: 18.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 85..117
e-value: 2.0E-5
score: 22.5
coord: 190..222
e-value: 1.8E-9
score: 35.2
coord: 224..258
e-value: 1.6E-7
score: 29.1
coord: 259..292
e-value: 1.1E-6
score: 26.4
coord: 121..153
e-value: 3.8E-5
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 189..234
e-value: 1.4E-14
score: 54.0
coord: 116..160
e-value: 1.7E-7
score: 31.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 187..221
score: 13.044
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..151
score: 10.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 9.942
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 222..256
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 11.729
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 152..186
score: 6.182
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 26..60
score: 6.566
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 184..250
e-value: 1.9E-19
score: 71.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 251..349
e-value: 1.1E-23
score: 86.1
coord: 60..183
e-value: 8.0E-29
score: 103.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 14..181
coord: 168..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10097contigH-canaliculatus_F_contig10097:73..4533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10097.123.1mRNA_H-canaliculatus_F_contig10097.123.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10097 73..4533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10097.123.1 ID=prot_H-canaliculatus_F_contig10097.123.1|Name=mRNA_H-canaliculatus_F_contig10097.123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=352bp
QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLL
DEMRDRGVAADETVKRALGLVQMMRSEGLAPTEMTYNSLLRLCGLSGCWA
TGLELMGSMEAEGIAPTTFHYNSMFMGLERGERWREAADLFRKMRLGGVK
PNALTYAPLIGVMDRCNKRDMAGAVLKEMLKGSPRDTTRSYNLLLNACAK
ARKWEHAQRVFKEMKERDVEPDMVTYNTVINALGRCGRVKEATVHLHAMK
EQGLSPDVVTFGTLIHACAQSASRETALALFAEMVSRGLKPNLEAYKGCI
VSCHKTGRYQQGLDMFDRMSAAKVRMDRVVFNTAIACCSQLKLWRRGVSE
P*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat