mRNA_H-canaliculatus_F_contig10097.123.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI) HSP 1 Score: 184 bits (466), Expect = 3.190e-48 Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 1 Query: 1 QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLLDEMRDRGVAADETVKRALGLVQMMRSEGLAPTEMTYNSLLRLCGLSGCWATGLEL 315
+VRKRWGFKA LFLIQEMRD L+I LVHYRGAVTACALT+QL+GVLPLLDEMRDRGVAAD VKRALGLVQMMRSEGLAPT +TYN LLRLCGL GCWATGLEL
Sbjct: 64 KVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAAD-VVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 167
BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE) HSP 1 Score: 163 bits (412), Expect = 2.090e-41 Identity = 92/162 (56.79%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 1 QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLLDEMRDRGVAADET---------------------------------------------------------VKRALGLVQMMRSEGLAPTEMTYNSLLRLCGLSGCWATGLEL 315
+VRKRWGFKAALFLIQEMR+A L+I LVHYRGAVTACALT+QL+GVLPLLDEMRDRGVAAD VKRALGLVQMMRSEGLAPT +TYN LLRLCGL GCWATGLEL
Sbjct: 315 KVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10097.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10097.123.1 >prot_H-canaliculatus_F_contig10097.123.1 ID=prot_H-canaliculatus_F_contig10097.123.1|Name=mRNA_H-canaliculatus_F_contig10097.123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=352bp QVRKRWGFKAALFLIQEMRDAGLDIGLVHYRGAVTACALTKQLAGVLPLLback to top mRNA from alignment at H-canaliculatus_F_contig10097:73..4533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10097.123.1 ID=mRNA_H-canaliculatus_F_contig10097.123.1|Name=mRNA_H-canaliculatus_F_contig10097.123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10097:73..4533- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10097:73..4533- >mRNA_H-canaliculatus_F_contig10097.123.1 ID=mRNA_H-canaliculatus_F_contig10097.123.1|Name=mRNA_H-canaliculatus_F_contig10097.123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2112bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10097:73..4533- (Hapterophycus canaliculatus Oshoro5f female)back to top |