mRNA_H-canaliculatus_F_contig1545.4028.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1545.4028.1
Unique NamemRNA_H-canaliculatus_F_contig1545.4028.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1545.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1545contigH-canaliculatus_F_contig1545:21103..22471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1371
Cds size1368
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.9733171-CDS-H-canaliculatus_F_contig1545:21102..224701622929280.9733171-CDS-H-canaliculatus_F_contig1545:21102..22470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1545 21103..22470 +
1696845749.0035853-CDS-H-canaliculatus_F_contig1545:21102..224701696845749.0035853-CDS-H-canaliculatus_F_contig1545:21102..22470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1545 21103..22470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1545.4028.1prot_H-canaliculatus_F_contig1545.4028.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1545 21103..22470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1545.4028.1

>prot_H-canaliculatus_F_contig1545.4028.1 ID=prot_H-canaliculatus_F_contig1545.4028.1|Name=mRNA_H-canaliculatus_F_contig1545.4028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=456bp
LNHTHSSRECVALRRQFEQHHEAFAKFMYETYGFGLTPGARGEMEQTANA
GRRPPPYHDPQQPWPRGRPQPPPRGYGPAPGGYSGRHPGGRGVGDSSRGR
GFGDRGTSYPGGRGRGGGGGSGGGRGGGRGGESRSPNFPTRHAFPASFYP
EFESSGDRLNSSEWGSGGYQQRREDKDGYGMAAYAGGEYGGGNEASWGNA
GGGYDHGHPSSGEEQEQSDDYPGYSAAGPDAFQPRTYGFYNPEQSTSEQQ
QQQQQQPQQQPVSATSASSSGASPYPDLGTSSSPGAPHAFMAHGGFLGES
LISEYKSITINGGIKLRASESFARFWAFVAAKKAEYAKAELDSADAADAS
SPDELSPVSTRAVEMDSVSESTSEPSKISPESERVLENTSCLPECMNVPD
PTPPIPGDARGHDSMSTASMESVCSDLACTGVVSRVPSAFMCNSGLVGRH
LSPVGS
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mRNA from alignment at H-canaliculatus_F_contig1545:21103..22471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1545.4028.1 ID=mRNA_H-canaliculatus_F_contig1545.4028.1|Name=mRNA_H-canaliculatus_F_contig1545.4028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1369bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1545:21103..22471+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAACCACACGCACAGCTCACGAGAGTGTGTTGCCCTGCGCCGGCAGTT
TGAGCAGCATCACGAGGCTTTTGCTAAGTTCATGTATGAGACATATGGAT
TCGGTCTCACCCCTGGCGCGAGAGGGGAAATGGAACAAACGGCGAATGCC
GGCCGTCGGCCGCCCCCTTACCACGACCCGCAGCAGCCATGGCCGCGTGG
TAGACCGCAGCCGCCACCACGCGGCTACGGACCCGCGCCGGGAGGATACT
CAGGTCGTCACCCCGGGGGACGTGGCGTTGGAGATAGCAGCAGAGGCCGC
GGCTTCGGAGACCGCGGCACATCATACCCCGGCGGCAGAGGCCGCGGGGG
CGGCGGCGGCAGCGGCGGCGGACGTGGCGGCGGACGTGGCGGCGAATCAC
GTTCACCTAATTTCCCGACACGGCACGCTTTTCCGGCAAGCTTTTACCCC
GAATTCGAATCTTCGGGTGACCGTTTGAATTCCTCCGAGTGGGGGAGCGG
AGGCTACCAACAGCGCCGCGAAGACAAAGACGGTTATGGGATGGCTGCCT
ACGCCGGGGGTGAATACGGAGGCGGCAACGAGGCCAGCTGGGGCAACGCC
GGTGGAGGGTACGACCATGGTCATCCTTCCAGCGGCGAGGAGCAGGAGCA
GAGCGATGATTACCCCGGGTACTCTGCGGCCGGTCCTGATGCCTTTCAGC
CACGGACGTACGGGTTCTACAACCCCGAGCAGTCGACCTCGGAGCAGCAG
CAGCAGCAGCAGCAGCAGCCACAGCAGCAACCCGTCAGCGCAACTTCAGC
CTCGTCTTCCGGGGCCTCTCCCTATCCTGACCTCGGAACGTCTTCATCTC
CTGGGGCACCTCACGCCTTCATGGCCCATGGTGGTTTTCTAGGCGAGTCT
TTGATTTCTGAGTACAAGTCGATTACGATCAACGGGGGGATCAAGTTGCG
TGCAAGTGAATCTTTCGCTCGTTTCTGGGCTTTCGTTGCTGCCAAGAAGG
CCGAGTATGCTAAAGCTGAGCTAGATTCCGCTGATGCCGCTGATGCTTCC
TCGCCTGATGAACTCTCGCCTGTGTCAACGCGTGCTGTTGAGATGGACTC
CGTGTCTGAATCCACGTCTGAACCGTCTAAGATTTCCCCCGAATCTGAGC
GCGTTCTGGAAAATACGTCTTGCCTACCCGAGTGTATGAACGTGCCTGAC
CCTACGCCACCCATTCCCGGTGATGCGAGGGGACATGACTCTATGTCAAC
TGCGAGTATGGAGAGTGTGTGTAGTGATCTCGCGTGTACTGGTGTTGTGA
GTCGTGTGCCCTCTGCGTTCATGTGCAATTCTGGACTTGTTGGTCGCCAC
CTCAGCCCCGTAGGCAGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1545:21103..22471+

>mRNA_H-canaliculatus_F_contig1545.4028.1 ID=mRNA_H-canaliculatus_F_contig1545.4028.1|Name=mRNA_H-canaliculatus_F_contig1545.4028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2736bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1545:21103..22471+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAACCACACGCACAGCTCACGAGAGTGTGTTGCCCTGCGCCGGCAGTT
TGAGCAGCATCACGAGGCTTTTGCTAAGTTCATGTATGAGACATATGGAT
TCGGTCTCACCCCTGGCGCGAGAGGGGAAATGGAACAAACGGCGAATGCC
GGCCGTCGGCCGCCCCCTTACCACGACCCGCAGCAGCCATGGCCGCGTGG
TAGACCGCAGCCGCCACCACGCGGCTACGGACCCGCGCCGGGAGGATACT
CAGGTCGTCACCCCGGGGGACGTGGCGTTGGAGATAGCAGCAGAGGCCGC
GGCTTCGGAGACCGCGGCACATCATACCCCGGCGGCAGAGGCCGCGGGGG
CGGCGGCGGCAGCGGCGGCGGACGTGGCGGCGGACGTGGCGGCGAATCAC
GTTCACCTAATTTCCCGACACGGCACGCTTTTCCGGCAAGCTTTTACCCC
GAATTCGAATCTTCGGGTGACCGTTTGAATTCCTCCGAGTGGGGGAGCGG
AGGCTACCAACAGCGCCGCGAAGACAAAGACGGTTATGGGATGGCTGCCT
ACGCCGGGGGTGAATACGGAGGCGGCAACGAGGCCAGCTGGGGCAACGCC
GGTGGAGGGTACGACCATGGTCATCCTTCCAGCGGCGAGGAGCAGGAGCA
GAGCGATGATTACCCCGGGTACTCTGCGGCCGGTCCTGATGCCTTTCAGC
CACGGACGTACGGGTTCTACAACCCCGAGCAGTCGACCTCGGAGCAGCAG
CAGCAGCAGCAGCAGCAGCCACAGCAGCAACCCGTCAGCGCAACTTCAGC
CTCGTCTTCCGGGGCCTCTCCCTATCCTGACCTCGGAACGTCTTCATCTC
CTGGGGCACCTCACGCCTTCATGGCCCATGGTGGTTTTCTAGGCGAGTCT
TTGATTTCTGAGTACAAGTCGATTACGATCAACGGGGGGATCAAGTTGCG
TGCAAGTGAATCTTTCGCTCGTTTCTGGGCTTTCGTTGCTGCCAAGAAGG
CCGAGTATGCTAAAGCTGAGCTAGATTCCGCTGATGCCGCTGATGCTTCC
TCGCCTGATGAACTCTCGCCTGTGTCAACGCGTGCTGTTGAGATGGACTC
CGTGTCTGAATCCACGTCTGAACCGTCTAAGATTTCCCCCGAATCTGAGC
GCGTTCTGGAAAATACGTCTTGCCTACCCGAGTGTATGAACGTGCCTGAC
CCTACGCCACCCATTCCCGGTGATGCGAGGGGACATGACTCTATGTCAAC
TGCGAGTATGGAGAGTGTGTGTAGTGATCTCGCGTGTACTGGTGTTGTGA
GTCGTGTGCCCTCTGCGTTCATGTGCAATTCTGGACTTGTTGGTCGCCAC
CTCAGCCCCGTAGGCAGTCTGAACCACACGCACAGCTCACGAGAGTGTGT
TGCCCTGCGCCGGCAGTTTGAGCAGCATCACGAGGCTTTTGCTAAGTTCA
TGTATGAGACATATGGATTCGGTCTCACCCCTGGCGCGAGAGGGGAAATG
GAACAAACGGCGAATGCCGGCCGTCGGCCGCCCCCTTACCACGACCCGCA
GCAGCCATGGCCGCGTGGTAGACCGCAGCCGCCACCACGCGGCTACGGAC
CCGCGCCGGGAGGATACTCAGGTCGTCACCCCGGGGGACGTGGCGTTGGA
GATAGCAGCAGAGGCCGCGGCTTCGGAGACCGCGGCACATCATACCCCGG
CGGCAGAGGCCGCGGGGGCGGCGGCGGCAGCGGCGGCGGACGTGGCGGCG
GACGTGGCGGCGAATCACGTTCACCTAATTTCCCGACACGGCACGCTTTT
CCGGCAAGCTTTTACCCCGAATTCGAATCTTCGGGTGACCGTTTGAATTC
CTCCGAGTGGGGGAGCGGAGGCTACCAACAGCGCCGCGAAGACAAAGACG
GTTATGGGATGGCTGCCTACGCCGGGGGTGAATACGGAGGCGGCAACGAG
GCCAGCTGGGGCAACGCCGGTGGAGGGTACGACCATGGTCATCCTTCCAG
CGGCGAGGAGCAGGAGCAGAGCGATGATTACCCCGGGTACTCTGCGGCCG
GTCCTGATGCCTTTCAGCCACGGACGTACGGGTTCTACAACCCCGAGCAG
TCGACCTCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAGCAGCAACC
CGTCAGCGCAACTTCAGCCTCGTCTTCCGGGGCCTCTCCCTATCCTGACC
TCGGAACGTCTTCATCTCCTGGGGCACCTCACGCCTTCATGGCCCATGGT
GGTTTTCTAGGCGAGTCTTTGATTTCTGAGTACAAGTCGATTACGATCAA
CGGGGGGATCAAGTTGCGTGCAAGTGAATCTTTCGCTCGTTTCTGGGCTT
TCGTTGCTGCCAAGAAGGCCGAGTATGCTAAAGCTGAGCTAGATTCCGCT
GATGCCGCTGATGCTTCCTCGCCTGATGAACTCTCGCCTGTGTCAACGCG
TGCTGTTGAGATGGACTCCGTGTCTGAATCCACGTCTGAACCGTCTAAGA
TTTCCCCCGAATCTGAGCGCGTTCTGGAAAATACGTCTTGCCTACCCGAG
TGTATGAACGTGCCTGACCCTACGCCACCCATTCCCGGTGATGCGAGGGG
ACATGACTCTATGTCAACTGCGAGTATGGAGAGTGTGTGTAGTGATCTCG
CGTGTACTGGTGTTGTGAGTCGTGTGCCCTCTGCGTTCATGTGCAATTCT
GGACTTGTTGGTCGCCACCTCAGCCCCGTAGGCAGT
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