mRNA_H-canaliculatus_F_contig1545.4027.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.290e-25 Identity = 62/180 (34.44%), Postives = 96/180 (53.33%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + EI W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ KVWN+++SK+ P+Q+ + A SPQ+ W+++ +FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 89 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSEIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKVWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 263
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5K2E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E9_9PHAE) HSP 1 Score: 112 bits (280), Expect = 7.610e-25 Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + +I W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ +FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 89 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 263
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.520e-25 Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + +I W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ +FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 235 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 409
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.530e-25 Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + +I W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ +FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 89 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 263
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.500e-24 Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + +I W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 89 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 263
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.630e-24 Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + H G GT + +I W + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 89 VAQAVKATAEAMS-----GHQGFAHTGTFRVNPGSDIDPWLGSVKKEQDLYIMFDVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 263
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.940e-24 Identity = 61/181 (33.70%), Postives = 93/181 (51.38%), Query Frame = 2
Query: 119 MAQLTSALLEVVKMGQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLE-GTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+AQ A E + + G GT+ + EI W + F F S + E + D LE EV VG V+ DLR +FG+ +V+K+ K+WN+L+SKV P+Q + A SPQ+ W+++ +FY EK+ E+ RLE +W +L E DY+A + A+RL+L
Sbjct: 80 VAQAAKATAEAI-----AEQQGFARSGTLRVNPGSEIEPWLGSVKNEQNLYIMFDIFHSKMISYFQEEGVHDALELEVEVKVGKRGVSIGDLRRLFGNEVVDKSFKLWNILISKVLYPPIQSLILAFESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDYIAHSEALRLRL 255
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5JW99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW99_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.590e-24 Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = 2
Query: 128 LTSALLEVVKM--GQQGQHPGGGTPGTIELKQRVEIPVWTEKFGRSEGNRSAFRAFKSSFQEWLSSERLDDVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+ S + + VK G H G GT + EI + + F F+S + E + DVL T+V VG V+ +LR +FG +V+K+ K+WN+++SK+ P+Q+ + A SPQ+ W+++ +FY EK+ E+ RLE EW+ L E DY+AR+ A+RL+L
Sbjct: 171 VASIVAQAVKATAGAMSGHQGFAHAGTFRVNPGSEIDPCLGSVKKEQDLYIMFEVFRSKMVSYFQEEGVYDVLGITDVKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRL 349
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.510e-21 Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 2
Query: 293 SSFQEWLSSERLDDVLE-GTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
S FQE E + D LE EV VG VN +LR FG+ +++K+ K WN+L+SKV P+Q + A SPQ+ W+++ +FY EK+ E+ RLE +W +L + E DY+ARA A+RL+L
Sbjct: 3 SYFQE----EGVHDALELEVEVKVGKRGVNVAELRRPFGNDVIDKSFKPWNILMSKVLYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDYIARAEALRLRL 121
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Match: A0A6H5K3A3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 7.960e-11 Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 2
Query: 332 DVLEGTEVPVGNPSVNTFDLRNMFGDGLVNKNRKVWNMLLSKVKVQPVQDNMYATGSPQRAWRVLIDFYGEKRAEERQRLETEWVDLCQGPDERVLDYLARANAIRLKL 658
+V + GNP T + G K+ K+W++L+SKV P+Q + A SPQ W+++ FY EK+ E+ RLE +W +L E DY+AR+ A+RL+L
Sbjct: 39 EVTYAQPLSAGNPVPPTGSQPSSSSQG---KSFKLWDILISKVLYPPIQSLILACESPQNDWKIVTKFYQEKKKSEKPRLEQDWKELEMRESESPQDYIARSEALRLRL 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1545.4027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1545.4027.1 >prot_H-canaliculatus_F_contig1545.4027.1 ID=prot_H-canaliculatus_F_contig1545.4027.1|Name=mRNA_H-canaliculatus_F_contig1545.4027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=226bp MSDQGVDAGHGGHQPPSPGSANNNNNNSAPAGADGQVSMAQLTSALLEVVback to top mRNA from alignment at H-canaliculatus_F_contig1545:20118..20799+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1545.4027.1 ID=mRNA_H-canaliculatus_F_contig1545.4027.1|Name=mRNA_H-canaliculatus_F_contig1545.4027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=682bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1545:20118..20799+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1545:20118..20799+ >mRNA_H-canaliculatus_F_contig1545.4027.1 ID=mRNA_H-canaliculatus_F_contig1545.4027.1|Name=mRNA_H-canaliculatus_F_contig1545.4027.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1356bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1545:20118..20799+ (Hapterophycus canaliculatus Oshoro5f female)back to top |