mRNA_H-canaliculatus_F_contig15440.4024.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15440.4024.1
Unique NamemRNA_H-canaliculatus_F_contig15440.4024.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15440.4024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15440contigH-canaliculatus_F_contig15440:966..2113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.808876-CDS-H-canaliculatus_F_contig15440:965..12111622929280.808876-CDS-H-canaliculatus_F_contig15440:965..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15440 966..1211 +
1696845748.9462655-CDS-H-canaliculatus_F_contig15440:965..12111696845748.9462655-CDS-H-canaliculatus_F_contig15440:965..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15440 966..1211 +
1622929280.8242629-CDS-H-canaliculatus_F_contig15440:2030..21111622929280.8242629-CDS-H-canaliculatus_F_contig15440:2030..2111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15440 2031..2111 +
1696845748.955304-CDS-H-canaliculatus_F_contig15440:2030..21111696845748.955304-CDS-H-canaliculatus_F_contig15440:2030..2111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15440 2031..2111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15440.4024.1prot_H-canaliculatus_F_contig15440.4024.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15440 966..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15440.4024.1

>prot_H-canaliculatus_F_contig15440.4024.1 ID=prot_H-canaliculatus_F_contig15440.4024.1|Name=mRNA_H-canaliculatus_F_contig15440.4024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
PLPAVCSSAFTWGRTYSRESSIAATVAHSVFIREACTLSQLSFSSSSPSS
PSSSSAAATATVGTASCVSSARLALRSAASRRRARREAEKLATEEEIVAS
TVQGGLDQS
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mRNA from alignment at H-canaliculatus_F_contig15440:966..2113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15440.4024.1 ID=mRNA_H-canaliculatus_F_contig15440.4024.1|Name=mRNA_H-canaliculatus_F_contig15440.4024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1148bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15440:966..2113+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCTACCTGCTGTGTGCAGCAGTGCGTTCACCTGGGGCCGGACGTACTC
CAGAGAGTCGTCCATTGCCGCCACCGTAGCCCACAGCGTATTCATCCGAG
AAGCGTGCACCCTGTCGCAGCTCAGCTTCTCGTCGTCATCCCCCTCCTCC
CCGTCCTCCTCCTCCGCCGCCGCCACCGCGACCGTCGGCACCGCTTCCTG
CGTGTCGAGCGCTCGCCTTGCCCTGCGCTCGGCAGCCAGCCGTCGCGCCA
TTTCCGCTTGGGCCTCGGCTGCCGCCGCCGCATGGCTCGCCCGGCGCTCT
TCGTCGGCCATCCACGCCGATGCCGCCTCCGCTGCTGCTACTACCGCCGC
CGCCGCCCATCGCCGAGCCTGACGCGCGTCTGCCACCCTCCGGGTCATGT
CTGCCGCCAACGCCGCCGCCAACGCCGCTTCCCTTGCGCGGCGCTCTGCT
GCTGCCCTCGACGCAATTTCTTCCTCCGCCGCGAGCTTCTCGACGTCGGC
GTGCCAAACGCGACGCCGAGAAGCTCGCGGCGGAGGAAGAAATTGCGTCG
AGGGCAGCAGCAGAGCGCCGCGCAAGGGAAGCGGCGTTGGCGGCGGCGTT
GGCGGCAGACATGGCCCGGAGGGTGGCAGCCGCGCGTCAGGCTCGGCGAT
GGGCGGCGGCGGCAGGGGCAGCGGAGGCGGCATCGACGTGGATGGCCGAC
CAAGAGCGCCGGGCGAGCCGTGCGGCGGCGGCAGCGGTGGCCCAAGCGGA
AATGGCGCAACGGCTAGGTGCCGAGCGCAGGGCGAGGCGAGAGCTCGAGG
CGCAGGAAGCGGTGCCGACGGTCGCGGTGGCGGCGGCGGCGGCGGAGGAG
GACGGGGAGGAGGCGATGGGGATCGAACAAGACGGAGGAAGAGGCTGCGG
CCAGCATCACGCGCGAGGCAAGAGAGGTTCGCCGCTAAGGCCACGCGGCT
GATGGAGGCCAGCGCGAGGCGCATCATAGTGCTCACCGCAGCGGTGAGGA
ACGGCCGCTTGGCGCAAGAGGCCGCGACAATTTTCGCACAAACCTGCATA
GACGTGGCCGCCGAGCGAGCGAGGCGCGAAGCCGAGAAGCTCGCGACGGA
GGAAGAAATTGTTGCATCCACCGTCCAGGGCGGCCTGGACCAGAGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15440:966..2113+

>mRNA_H-canaliculatus_F_contig15440.4024.1 ID=mRNA_H-canaliculatus_F_contig15440.4024.1|Name=mRNA_H-canaliculatus_F_contig15440.4024.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15440:966..2113+ (Hapterophycus canaliculatus Oshoro5f female)
CCTCTACCTGCTGTGTGCAGCAGTGCGTTCACCTGGGGCCGGACGTACTC
CAGAGAGTCGTCCATTGCCGCCACCGTAGCCCACAGCGTATTCATCCGAG
AAGCGTGCACCCTGTCGCAGCTCAGCTTCTCGTCGTCATCCCCCTCCTCC
CCGTCCTCCTCCTCCGCCGCCGCCACCGCGACCGTCGGCACCGCTTCCTG
CGTGTCGAGCGCTCGCCTTGCCCTGCGCTCGGCAGCCAGCCGTCGCCCTC
TACCTGCTGTGTGCAGCAGTGCGTTCACCTGGGGCCGGACGTACTCCAGA
GAGTCGTCCATTGCCGCCACCGTAGCCCACAGCGTATTCATCCGAGAAGC
GTGCACCCTGTCGCAGCTCAGCTTCTCGTCGTCATCCCCCTCCTCCCCGT
CCTCCTCCTCCGCCGCCGCCACCGCGACCGTCGGCACCGCTTCCTGCGTG
TCGAGCGCTCGCCTTGCCCTGCGCTCGGCAGCCAGCCGTCGCCGAGCGAG
GCGCGAAGCCGAGAAGCTCGCGACGGAGGAAGAAATTGTTGCATCCACCG
TCCAGGGCGGCCTGGACCAGAGTCGAGCGAGGCGCGAAGCCGAGAAGCTC
GCGACGGAGGAAGAAATTGTTGCATCCACCGTCCAGGGCGGCCTGGACCA
GAGT
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