mRNA_H-canaliculatus_F_contig1544.4020.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1544.4020.1
Unique NamemRNA_H-canaliculatus_F_contig1544.4020.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 544 bits (1402), Expect = 7.420e-187
Identity = 271/296 (91.55%), Postives = 284/296 (95.95%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQGLSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWASKAGMGTQGDAFVEGGAKVAASTASRELDELINALTSYLRSQSLWVRKEGQWDSDEM 888
            GFLVVATRVRLNEFNHD+LACDVARDFRVAYRDVEALYGR AMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVA+RRKANVIISFNNFPAKDSVP INELRELGLSM  FGPLGDNLSGIAKAV+GLP+++GFA+QGLSLAEEW PKA +AVGS LSDVPQEFKPSP+ATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAE LFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWA +AGMG QGDAFVEGGA+VAASTAS ELDELI ALTSYLRSQSLWVR+EG+WDSDEM
Sbjct:  168 GFLVVATRVRLNEFNHDQLACDVARDFRVAYRDVEALYGRTAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVARRRKANVIISFNNFPAKDSVPFINELRELGLSMENFGPLGDNLSGIAKAVSGLPLVNGFASQGLSLAEEWGPKAASAVGSMLSDVPQEFKPSPEATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAEVLFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWADRAGMGAQGDAFVEGGARVAASTASLELDELIKALTSYLRSQSLWVRREGRWDSDEM 463          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A836CAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD4_9STRA)

HSP 1 Score: 298 bits (764), Expect = 2.340e-91
Identity = 159/293 (54.27%), Postives = 207/293 (70.65%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKA---NVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVA--GLPMMSGFATQGLSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWASKAGMGTQGDAFVEG----GAKVAASTASRELDELINALTSYLRSQSLW 852
            GF+V+AT +R+NEFNH ELACDVAR+FR+ YRDVEALYGRAA+RR P+FG+GHS+GAK+ VL+NC+P+V DVA+RRKA   NV+ISFNNF A+DSVPL+ E+R LGL +G    L + +  + + VA  GL  +S  A +GL+LA EW        G+ L  VP EFKP+P   W LL   Y+VRNNLV+QFK DT+DQS +L+ T+F+RFGRDG L++S L G+HVTPNTPD  +     +W + A  G    A   G    G + +AS A+ ELDELI  +  YL+SQ+LW
Sbjct:  143 GFVVLATPIRINEFNHQELACDVAREFRLCYRDVEALYGRAALRRAPVFGIGHSMGAKLQVLINCFPDVRDVARRRKAIEANVLISFNNFAARDSVPLLAEMRALGLRLGG---LSEGVKAVRETVASLGLGGLSPMAERGLNLAVEW--------GAGLGGVPDEFKPAPDELWQLLEGEYAVRNNLVVQFKSDTLDQSGRLSRTIFDRFGRDGALQYSTLQGSHVTPNTPDLSEV-DLDEWLTAAAGGGPAAARAAGVASSGVRASASVAAAELDELIRTVVIYLKSQALW 423          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A7S2UUU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUU1_9STRA)

HSP 1 Score: 211 bits (537), Expect = 7.680e-60
Identity = 124/303 (40.92%), Postives = 173/303 (57.10%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEV--VDVAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAG-----LPMM------SGFATQGLSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFRDT--RQARDWASKAGMGTQGDAFVEGGAKVAASTASRELDELINALTSYLRSQSLWVRKE 864
            GFLVVAT +  N F+H   A +  R FR A+RD+E LYG A   R+P FG+GHSLGAK+ VL +C   V   D  +RR+ANV+ISFNNF A++SVPL+ E+  LG  +G+F PL D  SG    VAG     LP +      + F  QG    E+ AP+    V   +S++  EF P P+  W  + D+Y V+ NL++QFK+D+IDQSP L++ L  +  R G LEF RLDG H+TP   D ++   +   DW          D F         S A  E +E++  + ++LR  S+W R++
Sbjct:    2 GFLVVATPIMANTFDHRAEAMESCRQFRSAWRDIEDLYGPAQANRLPQFGLGHSLGAKLIVLSSCLRGVGEKDPIERRRANVLISFNNFSARESVPLLEEIGALGKDLGQFQPLLDQFSGQVSNVAGKVQTQLPRIEKSLFSTSFLKQGFEAVEKVAPQIAGIVSDTVSNIEFEFSPDPEEMWQAVEDQYPVKKNLIIQFKKDSIDQSPYLSQLLDEKLDRQGTLEFIRLDGNHLTPVMQDIQNDWFKAQPDWTKSKFT----DEFQ--------SLAMMEFEEMLGIVINFLRENSVWQREQ 292          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: W7TQQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQQ9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.100e-30
Identity = 103/274 (37.59%), Postives = 143/274 (52.19%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVD--------VAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEF---GPLGD-----------NLSGIAKAVAGLPMMSGF--ATQGLSLAEEWAPKAVAAVGSALSDVPQ----EFKPSPQATWDLLTD--------------RYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDG-----ELEFSRLDGTHVTPNTP 681
            G+ V+AT +  + F+H   A  +A  +      VE +YG    +++P+FG+GHSLGAK+ +LL   P  +          A  R+ANV+++FNNF AK SVPL+ ELRELG S+      G L D           NLSG +   A     SGF  A++GL++A ++           LS +P     +F PSP+ TW LL+                Y+V NNLV+ F +DTIDQS +L   L  R GR+G      +E  RL GTH+TPNTP
Sbjct:  183 GYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPPPSLPSFSSSSAPTAGPRRANVLVAFNNFSAKQSVPLLEELRELGQSVAGMDLSGKLEDISRMVSSLAALNLSGASSPNAQRETTSGFDLASKGLTMAMDF-----------LSSLPTSGVPDFTPSPEETWALLSSPPLFPSSSLPSSSPSYAVLNNLVVSFDKDTIDQSEELVALLRER-GREGGRGGGRVEHVRLVGTHLTPNTP 444          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A7S1HJK2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HJK2_HEMAN)

HSP 1 Score: 131 bits (329), Expect = 5.630e-29
Identity = 95/247 (38.46%), Postives = 129/247 (52.23%), Query Frame = 1
Query:    4 FLVVATRVR-LNEFNHDELACDVARDFRVAYRDVEALYGRAAMR--RIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKA-NVIISFNNFPAKDSVPLINEL----RELGLSMGEFGPLGDNLSGIAKAVA---GLPMMSGFATQG-LSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRF-----GRDGELEFSRLDGTHVTPNTPDFRD 693
            F+VVA     L+  +H + A + A  F  A  +++   G        +P+ GVGHSLG KV VL+   PE  + A R KA NV ++FNNF AK+SVP++++L    REL   + E  P+ D +   A+ +     L  + G A  G  S   ++  K   A  SA + V  EF P P  T  LL D YSV  N+V++F  DTIDQ  +L + L  +F     G  G LE   L GTHVTPN PD  D
Sbjct:  223 FVVVAAPCAGLSGMDHYKAAYEAAFKFSSACTELKGDLGGDVFDADELPVVGVGHSLGCKVQVLMGAMPEAAEAAGRAKAANVHLAFNNFGAKESVPVLSDLAEAQRELQKGLKEVAPVLDKVGAFAEEIGRNKNLQDIFGAAATGRASEVADFVSKVGRAAASASTPVGDEFAPDPTETMKLLGDDYSVSRNMVVKFSDDTIDQGIELCKQLRTKFTDKVTGTGGRLELKTLPGTHVTPNIPDLSD 469          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A7S1XE42_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XE42_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 6.140e-26
Identity = 92/242 (38.02%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRR--IPLFGVGHSLGAKVHVLLNCYPEVV-DVAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQGLSLA-EEWAPKAVAAVGSALSDVP--------QEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFR 690
            G +VVAT V L +FNH +LA D A  F      +E+   R + R   +P+ GVGHSLGAK+HVLLN   +V  D    R  NV+IS+NNF A  S+P  N++      +G  G   + + G+   V  +  + G  +   SL   E +  ++ AVG  L  +         +EF P P    D+L ++Y+V NN V+QF  D+ID S  LA  L  RF     + F RL GTH+TP TPD +
Sbjct:  123 GCIVVATPVGL-QFNHTQLARDSAITFMETRAAIESSKVRESSRIGFLPVLGVGHSLGAKLHVLLNSDEDVRRDYVGARIGNVLISYNNFSALQSIPRWNDM------IGGMGAASERIRGVRPGVGSI--LDGVRSIANSLGIPERSLDSLNAVGPFLDGLNTALDSLQVEEFLPPPAKVDDMLQNQYAVANNCVVQFVEDSIDDSDNLARVLTTRFSSRNTV-FRRLSGTHLTPVTPDLQ 354          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A7S0W3H1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3H1_9CRYP)

HSP 1 Score: 119 bits (298), Expect = 4.820e-25
Identity = 83/202 (41.09%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  136 IPLFGVGHSLGAKVHVLLNCYPEVVDVAKR-RKANVIISFNNFPAKDSVPLINEL----RELGLSMGEFGPLGDNLSGIAKAVA---GLPMMSGFATQG-LSLAEEWAPKAVAAVGSA--LSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRF-----GRDGELEFSRLDGTHVTPNTPDFRD 693
            +P+ GVGHSLG KV VL+   P+  + A R R ANV ++FNNF AK+SVP++ EL    RE+  +  E  P+ D +   A+ V     L  + G A  G  S   ++  K   A G+A   + V  EF P PQ T  L+ + Y V  NLV++F  DTIDQ   L + L  +F     G  G LE   L GTHVTPN PD  D
Sbjct:  254 LPVVGVGHSLGCKVQVLMGGLPDASEAAGRPRAANVHVAFNNFGAKESVPILTELAEAQREIQRAAAEVAPVLDKVGAFAEEVTKNKNLQDIFGAAAAGRASEVADFVSKVGRAAGAAGATAAVGDEFAPDPQETLRLVGEGYEVSRNLVVRFSDDTIDQGIDLCKGLRAKFTDKATGVGGRLELKTLPGTHVTPNIPDLSD 455          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: A0A1Z4JNZ5_LEPBY (Uncharacterized protein n=2 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JNZ5_LEPBY)

HSP 1 Score: 111 bits (278), Expect = 7.240e-24
Identity = 78/230 (33.91%), Postives = 113/230 (49.13%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQGLSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFR 690
            G+LVVAT   +N F+H E+A  V   F  A  +V +   R ++R +P++G+GHS+G K+H+L+         A  R  NV+ISFNN+ A+D+VPL+ +  +                              F  QG+++                     EF PSP  T  L+ DRY+VR NL+++F  D+IDQS  LA+ L   F   G +   RL GTHVTP  PD +
Sbjct:   48 GYLVVATPF-VNTFDHTEIAKSVLVSFERAMENVRS---RVSVRYLPIYGIGHSMGCKLHLLIGSL-----FAVERAGNVLISFNNYAARDAVPLVEQFSQF-----------------------------FKPQGVAV---------------------EFTPSPVETNALIRDRYAVRRNLLIKFADDSIDQSLGLAQLLEESFP--GMIATRRLKGTHVTPLGPDVK 216          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: L1JAP7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAP7_GUITC)

HSP 1 Score: 114 bits (284), Expect = 2.080e-23
Identity = 86/251 (34.26%), Postives = 125/251 (49.80%), Query Frame = 1
Query:    7 LVVATRVR-LNEFNHDELACDVARDFRVAYRDVEALYGRAAM--RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKR-RKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQ---GLSLAEEWAPKAVAAVGSALSDVPQ--------------EFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRF-----GRDGELEFSRLDGTHVTPNTP 681
            +V+AT    L   +H + A + A  F  A + ++   G        +P  G+GHSLG KVH+L+N   +   +  R R ANV I+FNN+ AK S+P+++EL +L   M +         G+A A   L  +S FA        L + +  ++ + V S +  + +              EF PSP+ T  LL D YSV  NL ++F  D IDQS  L E L ++F     G  G L+  RL GTH+TPNTP
Sbjct:  118 IVIATPCAGLTGMDHYKAAFEAAYKFAGAAKALQGELGSDMFDPAELPTIGMGHSLGCKVHLLINSIEDTKKIIGRVRAANVHIAFNNYDAKKSIPILSELSKLQSEMSK---------GLAAAAPVLESISAFANSMKTNSQLKDVFGSESASKVFSFIEMLSETGKNYAANNQEPLDEFSPSPEDTMRLLKDEYSVSRNLAVKFLSDDIDQSILLCEALRDKFTSPTTGIGGRLDLKRLPGTHITPNTP 359          
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Match: U9VHV5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VHV5_9CYAN)

HSP 1 Score: 107 bits (268), Expect = 1.310e-22
Identity = 74/233 (31.76%), Postives = 111/233 (47.64%), Query Frame = 1
Query:    1 GFLVVATRVRLNEFNHDELACDVARDFRVAYRDVEALYGRAAM---RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQGLSLAEEWAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFR 690
            G+++VAT   +N F+HD +A +V   F     D   +Y R  +   R +P++G+GHS+G KVH+L+     V      R  N++ISFNN+PA+ S+PL+ +  +       F P                                             D   EF PSP  T DL+ DRY+V  NL+++F++DTIDQ+  L++ LF RF +   ++   L GTH TP   D R
Sbjct:   48 GYIIVATPF-INTFDHDAIAAEVLTTF-----DQAMIYLRRQVIGDRYLPIYGMGHSMGCKVHLLIASLYNV-----DRAGNILISFNNYPARKSIPLLEQFVQ-------FAP---------------------------------------------DFDIEFTPSPGQTLDLVRDRYTVGRNLLIKFRKDTIDQTYDLSDVLFQRFPQFTAIQI--LQGTHTTPVAQDVR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1544.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS7_ECTSI7.420e-18791.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAD4_9STRA2.340e-9154.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUU1_9STRA7.680e-6040.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TQQ9_9STRA1.100e-3037.59Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1HJK2_HEMAN5.630e-2938.46Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S1XE42_9RHOD6.140e-2638.02Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0W3H1_9CRYP4.820e-2541.09Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Z4JNZ5_LEPBY7.240e-2433.91Uncharacterized protein n=2 Tax=Leptolyngbya TaxID... [more]
L1JAP7_GUITC2.080e-2334.26Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
U9VHV5_9CYAN1.310e-2231.76Uncharacterized protein n=1 Tax=Leptolyngbya sp. H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1544contigH-canaliculatus_F_contig1544:52..4942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.9
Seed ortholog evalue7.4e-130
Seed eggNOG ortholog2880.D7FVS7
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QSXN@2759,COG1084@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1350
Ec32 orthologEc-01_001990.1
Exons6
Model size1891
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1544.4020.1prot_H-canaliculatus_F_contig1544.4020.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1544 178..3942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.095823-UTR-H-canaliculatus_F_contig1544:51..1771622929280.095823-UTR-H-canaliculatus_F_contig1544:51..177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1544 52..177 +
1696845748.6018147-UTR-H-canaliculatus_F_contig1544:51..1771696845748.6018147-UTR-H-canaliculatus_F_contig1544:51..177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1544 52..177 +
1622929280.2231698-UTR-H-canaliculatus_F_contig1544:3942..49421622929280.2231698-UTR-H-canaliculatus_F_contig1544:3942..4942Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1544 3943..4942 +
1696845748.6723428-UTR-H-canaliculatus_F_contig1544:3942..49421696845748.6723428-UTR-H-canaliculatus_F_contig1544:3942..4942Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1544 3943..4942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.1192513-CDS-H-canaliculatus_F_contig1544:177..2821622929280.1192513-CDS-H-canaliculatus_F_contig1544:177..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 178..282 +
1696845748.6146317-CDS-H-canaliculatus_F_contig1544:177..2821696845748.6146317-CDS-H-canaliculatus_F_contig1544:177..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 178..282 +
1622929280.1397932-CDS-H-canaliculatus_F_contig1544:1135..12691622929280.1397932-CDS-H-canaliculatus_F_contig1544:1135..1269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 1136..1269 +
1696845748.6255589-CDS-H-canaliculatus_F_contig1544:1135..12691696845748.6255589-CDS-H-canaliculatus_F_contig1544:1135..1269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 1136..1269 +
1622929280.1614823-CDS-H-canaliculatus_F_contig1544:1876..20121622929280.1614823-CDS-H-canaliculatus_F_contig1544:1876..2012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 1877..2012 +
1696845748.6351137-CDS-H-canaliculatus_F_contig1544:1876..20121696845748.6351137-CDS-H-canaliculatus_F_contig1544:1876..2012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 1877..2012 +
1622929280.1778162-CDS-H-canaliculatus_F_contig1544:2523..26691622929280.1778162-CDS-H-canaliculatus_F_contig1544:2523..2669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 2524..2669 +
1696845748.6448362-CDS-H-canaliculatus_F_contig1544:2523..26691696845748.6448362-CDS-H-canaliculatus_F_contig1544:2523..2669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 2524..2669 +
1622929280.197747-CDS-H-canaliculatus_F_contig1544:2995..31071622929280.197747-CDS-H-canaliculatus_F_contig1544:2995..3107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 2996..3107 +
1696845748.653711-CDS-H-canaliculatus_F_contig1544:2995..31071696845748.653711-CDS-H-canaliculatus_F_contig1544:2995..3107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 2996..3107 +
1622929280.2112653-CDS-H-canaliculatus_F_contig1544:3810..39421622929280.2112653-CDS-H-canaliculatus_F_contig1544:3810..3942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 3811..3942 +
1696845748.6629531-CDS-H-canaliculatus_F_contig1544:3810..39421696845748.6629531-CDS-H-canaliculatus_F_contig1544:3810..3942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1544 3811..3942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1544.4020.1

>prot_H-canaliculatus_F_contig1544.4020.1 ID=prot_H-canaliculatus_F_contig1544.4020.1|Name=mRNA_H-canaliculatus_F_contig1544.4020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=255bp
MRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDS
VPLINELRELGLSMGEFGPLGDNLSGIAKAVAGLPMMSGFATQGLSLAEE
WAPKAVAAVGSALSDVPQEFKPSPQATWDLLTDRYSVRNNLVLQFKRDTI
DQSPQLAETLFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWASKA
GMGTQGDAFVEGGAKVAASTASRELDELINALTSYLRSQSLWVRKEGQWD
SDEM*
back to top

mRNA from alignment at H-canaliculatus_F_contig1544:52..4942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1544.4020.1 ID=mRNA_H-canaliculatus_F_contig1544.4020.1|Name=mRNA_H-canaliculatus_F_contig1544.4020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4891bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1544:52..4942+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTCTTGGTGGTGGCCACACGGGTGCGACTGAACGAGTTCAACCACGA CGAGCTGGCGTGCGACGTCGCGCGCGACTTCCGAGTGGCGTACCGCGACG TGGAGGCGTTGTACGGGCGGGCCGCCATGCGCCGCATCCCCCTGTTCGGG GTGGGCCACTCCCTGGGCGCCAAGGTGCACGTGCTGCTGAATTGCTACCC GGAGGTGGTGGACGTGGCGAAGCGAAGAAAGGTACGGTAGGAGAGAGGGA GGGAGGGAGGGAGGGAGGGAGTGGGGAAGGATATCCGGAACGTTCTCGAT CAACGCTTTGCGTGCCTGGGGGGAGGCAGGGGCGAGAACGCCGGTCGCAT GACTTTTTCGTGCCGGGCGTTTCATTTTCATTTTCTTTGATTCTGTTTGG CCCGGAGTATTCTTTGGTGCGCTTTTATTTGTAGACTGATTCGGTGACGA CGACTTGCACAACTCGACGCGTCAGCGTCGTTCCGTTGTTTAATCTCAGC TGATTCCGTGCCATGTGCTCGCAGATGACTGTGTCTGTGCTGCAGTAGTC CGGGGTCGTATTGCGAGCGTTCTCTGTATCGTCCGGTCCCCCCCTCCCCA AAATATCCCCGTTGTTACAGCATCAAAAATATAGCAAGGCTACGCTTTCC CCAAAGCACGGGGTCATTGACTTCACGGAAACTGCCCACAGGGGGCGATG TTGTTGCGACAATCGGTGTTCTTCTGGATCCTCTCATATTGTGATTTCCG TAGCTTGGAAGAAGGCACAACATCTCTCGAGAAAAACGAAGCTAGCAATG ACACCCACGATGTAGCTGGCTCGACGTAACGTGCAAACCCGAGGGGACGC CGCAGCCCCCAACCCCGCCTCGCGCCGGCGAATGGAAACCCGTCAAAAAG ATACTTGGTCCTCGCTTTCTGAGGGAGCGATGCGTTGTTCTTCGGTCGTA ACAAAGGCTGGTGCGGCCGTCCATGCTCAAGAGTATTATACAACTTGCCG AGCGCTCGCTCCCTCCACCCTCGCCCACCCTCCTTCTTCGTCGTCGTCGC CCCGTCGTGTTGCTCTCTTTCTCCGCTACGAAAGGCGAACGTGATCATCA GCTTCAACAACTTCCCGGCCAAGGACAGCGTGCCGCTCATCAATGAGTTG CGAGAGCTCGGCTTGTCGATGGGGGAGTTCGGCCCGCTGGGCGACAACCT CTCGGGCATCGCGAAAGCGTGAGTGGCCCTCTCACCTGTTGGGATGAGCT CTGCGTTTGCGCCAGCGTCTACACGCGGTCTAGGCGGCACGCGGGTGAGG GATGGCCTGGTTTTGGCGATCATGGAGTAGCGCCGAGCTGGATGGGCACC GCGCGCAAGCGTGGAGAGTATTTCCGAGCATAAAGGGGCGTCACTCCCAA CCTATGGTGTACTGTATCACAGCAATAGTGGCAAGGCCCATCTGTCCTAC TTTCAGTGTGGCCGCCGCGGGGTCGTGGCACGTTGACGGCGACCAATTGG ACGCTCTCAACCTGCACAGAGGGCACAAAAGTGCAATGCGGCCGAACTCA CGAGATCGGCGCATGACAAGGGGCATCCGTAGATCGCTGAACCGCGTACC GTATACACAGACCGGCAAAACCAAGGGTCTGAAAAGGCGGTAGATCGGTA CCCGTCACGTGACCACTTGTCAACAGAAACGTCGCGGATGAGAATGAGTT GGATTTGAGGAAACTGCAGACGTCGCACGTCCGACCGCTGGCCCTCGAGC CCCTCGGCCTCACACTCCTTGCCACGCGCTTTTCTCTCCCGCTTTTCCGA TGCATCGATTTTCGCGTTTCGGCAGAGTCGCTGGGTTGCCAATGATGAGC GGCTTCGCAACTCAAGGGTTGTCCCTGGCGGAAGAGTGGGCACCGAAGGC GGTCGCTGCGGTCGGCTCTGCGCTGTCGGACGTGCCCCAGGAGTTCAAGC CTTCTCCCCAGGTGACCCGCTAGTTAGGGCGGAAAGGCGATTTGGAGATA TGGGCCGGTGTGCAAGTCGACCTTTCCTCGATGCCCGGAACCCATCCCCC CACACCCCTGCTGTGTTCGTGCCGTGTACCGCTGGAGCAGCCGCCTGGCG ATCACGTGCCGGTACGTTCTTGATCGCTTCTAGGACGGGATTTTACGCCC ATTGCCAGAAGTACCGACCCAGACAGGTGAACCCAATGTCATAGCTCGCC GACGCTTTGGTGGGCCGTGTTGCTCGTGGGAGCTTTTCGAGCGCAACGGC GAGCGCGGCACTGTGCTTCGTTCGCCAAACCCGCTGGTACATTTGTGTGC ACGCACATATGTGGGAATGAGAAGCCCTCTCGCGGAGTGTGCCCGTGGTG ACAGTCCCGCCCCTCCTCGTTTGTTTGTCCGTGCTTTCGTTTGCTCCGCG TGTCCTTTCGTTTCGTGCTGATGGCCTCGACTCTCCTTTGTCGATCGATC TCTGCGTGGTGAAACGTGGCAGGCTACCTGGGACCTGTTGACGGATCGAT ACTCGGTGCGGAATAACCTCGTGCTCCAGTTTAAGCGCGACACGATAGAC CAGAGTCCGCAGCTCGCTGAGACGCTCTTCAACCGCTTCGGCAGGGACGG GGAGTTGGAGTTTTCCAGGTGAGTTTCACAGGAGTCGGCAGGTGCAGATG TCGAACGCAGGCGTGGAATGAGCAGCGTTAATTTTGTTAGTTATGTCGAC CATGGATGTTGGAGGAAGTGAAGCGGATCTTGTATTTTCTTGCGCGTGGG TGCTCTCACTTTCAGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTCTCGTC TCCTGCATCTGCGCATGCTGGTCTCCCTTTCCGCTGTTTGCGTTGCCTCA CCTGTAGCCAACTCTGCCCGCCTTCACGTGCACGCTGAGTACATTGCCTT CACCGCGGTGCCCCCCTCCTTTCCCCCTCTTCGACTCTGTCCAGACTTGA CGGCACTCACGTCACCCCCAACACCCCGGATTTCAGAGACACGCGACAAG CACGGGACTGGGCGAGCAAAGCCGGCATGGGCACGCAGGGGGATGCCTTT GTCGAGGTGAACGAACAATGACGTGCAAGTGCTTTGTGGCGAGACTGCCA AGGAACTAGGCGTGCGTGAAAGAAGTGCAGGTTCTCGTGTTTGCTGGCGA CCGTGAGCTGTGTGTTTTCCCCCCTGTCCGGTGTTGGCACGGCCGTTTCC ATCGGCGCGGTGAATGAAAGCAGGAAGACTTGCACCGACACCGGGGAAAA AAAACAGCAAAATTGAGCCCCTGCTAGTTGGCTGGATGTCGTTGCGAATC TCATTTCCGTTGAAACCTTCGACCGTCGCCGTGCTTCTCGGCTCGGGGTT TTTACGTGGGCAAGTTTTTCCGCGGCCTTACTCGTAAGGAGCAACCTGGT GCTGCCCCTGGTGACTCAATCCATACTCTGGGAGTCTTCACTTCCTCGAG ACAAGCTTAGCTTGCTGGTTCCTGAGGCAAATTGATGTGGCAGGGCTAAG GTCTGTTTTGTTTCCCTCTGTTTTGTTGATTCGAACGACGTCACCTCCGC CGTCCTTTGGTCCCCTGCGCGAATCAGCGGACCCGAACCGGCAATATACC GCTCGCACAACAAACGCAGGCATGGAGGTTTTACCTCTGATCGGATGGCC GCGCACCTCTCAGTCGCACCCCGCGCCCTTCTGTTCCCCGCCCCGACCCC AACGCTTCCTTGATTTTTCGGCTCTTACTTATGTTATTCGTACGATTCTC ATTTCACAGGGAGGGGCGAAAGTGGCGGCGTCCACGGCAAGCCGCGAGCT GGACGAGCTTATCAACGCCCTCACGTCGTACCTCAGGTCTCAGTCTCTAT GGGTACGAAAGGAAGGCCAGTGGGATAGCGACGAGATGTAGCGAGACTTG AAACTTCGGGTACGCGGTGCAGCGCGTGTAAAAGAAGCGGGGAACAACGA CCGTCCGCCGAGACCTCGGCGTGCTTCTTTTCGCCTGTCTTCCTTGCTGG ACTGGCGGCTGCCGTGCGACTGGTTGCGTAGGGCGGGTGTCTTGCCTTAA ACCTTGCGTCTCGTACCAAGGTTGTTTTGGCCGCTCCTGGAGCAGCCGGA ATACAGCCGCGGCAACATTGGGGGCTTTCTCGCGCGGCTGTTGGAGTGAG TATCACCCATGTTGATAGATGTGGAAGCAAGCGGGGCTTGTCTGGGGCGA AGTGGGTGAGGCGTTTGCGGTCGAGATTGCGGTCGAGTGCCAGAACGGAA TGGGCGTCGTGATAGCTGTTGCAAACATGGTTGTGCTGCGAGGTGTGTCT GTGGAGTTTGCGGCGGTCTTTGCCGAGGAAGCCTGGGGTTCGCTTTTGAT AAGGGTGCTTTTGTCGTTCCAGGGTGTAGAAGTGATGTCTGCTGCATGTC TTCGTGCCAGGTGTACTACGAGAGCTGCTCATGTTAGCTGGATCAAGCGG GTGTGGTACAGAGGGTGTGCTACTAAGATATACTCATGTGTGCGACATAG CGCCTGGTAAAGTTCTGTGAAGATTTTTGTGTCTTGGTTTCTCATGTGAA ACGCCTTCGAAATTCCCAAGGTCGACATTGGTATTATGACAGCTAAGCAA ACACGGGCGCGATGCCACCAATGTGGTTGTCCTGATGGCGAGGGGAACGA TTTGTCAACGTACATGCTACATTTCAGCAGCAGGTTTACCTTGGCGTGTG GCAGAACGAGCCCACACGTGCGCCCCCTCCCCCAACAAAAGCACTCATCG ACAACATTTGTGAAAGAGAAGCACATGGCACTCAGGGTAGTAAATACCAC ACAGTACCACACGATTTAGAGTACGTTCCCGCCACAGTGTGCACGATAAC AGAGAGGGTCCAGGCTTACTATTCCAGCCTTTGAAATTTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1544:52..4942+

>mRNA_H-canaliculatus_F_contig1544.4020.1 ID=mRNA_H-canaliculatus_F_contig1544.4020.1|Name=mRNA_H-canaliculatus_F_contig1544.4020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1530bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1544:52..4942+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCGCATCCCCCTGTTCGGGGTGGGCCACTCCCTGGGCGCCAAGGT
GCACGTGCTGCTGAATTGCTACCCGGAGGTGGTGGACGTGGCGAAGCGAA
GAAAGATGCGCCGCATCCCCCTGTTCGGGGTGGGCCACTCCCTGGGCGCC
AAGGTGCACGTGCTGCTGAATTGCTACCCGGAGGTGGTGGACGTGGCGAA
GCGAAGAAAGGCGAACGTGATCATCAGCTTCAACAACTTCCCGGCCAAGG
ACAGCGTGCCGCTCATCAATGAGTTGCGAGAGCTCGGCTTGTCGATGGGG
GAGTTCGGCCCGCTGGGCGACAACCTCTCGGGCATCGCGAAAGCGCGAAC
GTGATCATCAGCTTCAACAACTTCCCGGCCAAGGACAGCGTGCCGCTCAT
CAATGAGTTGCGAGAGCTCGGCTTGTCGATGGGGGAGTTCGGCCCGCTGG
GCGACAACCTCTCGGGCATCGCGAAAGCAGTCGCTGGGTTGCCAATGATG
AGCGGCTTCGCAACTCAAGGGTTGTCCCTGGCGGAAGAGTGGGCACCGAA
GGCGGTCGCTGCGGTCGGCTCTGCGCTGTCGGACGTGCCCCAGGAGTTCA
AGCCTTCTCCCCAGAGTCGCTGGGTTGCCAATGATGAGCGGCTTCGCAAC
TCAAGGGTTGTCCCTGGCGGAAGAGTGGGCACCGAAGGCGGTCGCTGCGG
TCGGCTCTGCGCTGTCGGACGTGCCCCAGGAGTTCAAGCCTTCTCCCCAG
GCTACCTGGGACCTGTTGACGGATCGATACTCGGTGCGGAATAACCTCGT
GCTCCAGTTTAAGCGCGACACGATAGACCAGAGTCCGCAGCTCGCTGAGA
CGCTCTTCAACCGCTTCGGCAGGGACGGGGAGTTGGAGTTTTCCAGGCTA
CCTGGGACCTGTTGACGGATCGATACTCGGTGCGGAATAACCTCGTGCTC
CAGTTTAAGCGCGACACGATAGACCAGAGTCCGCAGCTCGCTGAGACGCT
CTTCAACCGCTTCGGCAGGGACGGGGAGTTGGAGTTTTCCAGACTTGACG
GCACTCACGTCACCCCCAACACCCCGGATTTCAGAGACACGCGACAAGCA
CGGGACTGGGCGAGCAAAGCCGGCATGGGCACGCAGGGGGATGCCTTTGT
CGAGACTTGACGGCACTCACGTCACCCCCAACACCCCGGATTTCAGAGAC
ACGCGACAAGCACGGGACTGGGCGAGCAAAGCCGGCATGGGCACGCAGGG
GGATGCCTTTGTCGAGGGAGGGGCGAAAGTGGCGGCGTCCACGGCAAGCC
GCGAGCTGGACGAGCTTATCAACGCCCTCACGTCGTACCTCAGGTCTCAG
TCTCTATGGGTACGAAAGGAAGGCCAGTGGGATAGCGACGAGATGTAGGG
AGGGGCGAAAGTGGCGGCGTCCACGGCAAGCCGCGAGCTGGACGAGCTTA
TCAACGCCCTCACGTCGTACCTCAGGTCTCAGTCTCTATGGGTACGAAAG
GAAGGCCAGTGGGATAGCGACGAGATGTAG
back to top