mRNA_H-canaliculatus_F_contig15439.4018.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15439.4018.1
Unique NamemRNA_H-canaliculatus_F_contig15439.4018.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.610e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -1 
Query:  120 QGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNN 224
            QGKY+EAEPLYKRSLAI EKVYGPDHP VATALNN
Sbjct:  351 QGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNN 385
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 8.030e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = -1 
Query:  111 LALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRAG 233
            L  QGK+EEAEPLY+RSLAI E+VYGPDHP VAT LNN AG
Sbjct:   78 LESQGKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAG 118
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 62.0 bits (149), Expect = 9.360e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -1 
Query:  111 QGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRAG 224
            QGKYEEAEPLY+R+L I E V GPDHP+VAT LNN AG
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAG 41
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = -1 
Query:  114 QGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRA 224
            QGKY+ AEPLY RSLAI EKVYGPDHP VAT+LNNRA
Sbjct:  395 QGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRA 431
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.320e-10
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = -1 
Query:  111 SLPHKNPLLALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRAG 257
            ++P + PLLA++GKY +AEPL +RS AI EKV GP+HP VA +LNNRAG
Sbjct:  392 AVPSQTPLLAVRGKYADAEPLCERSPAIREKVLGPEHPDVAQSLNNRAG 440
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-9
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = -1 
Query:  114 LLALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRA 236
            L  +QGKY EAEPLY+RSLAI EKV GP+HP VAT+L+NRA
Sbjct:  689 LFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRA 729
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BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 62.0 bits (149), Expect = 1.970e-9
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -1 
Query:  111 QGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRAG 224
            QGKYEEAEPLY+R+L I E V GPDHP+VAT LNN AG
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAG 41
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.100e-9
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = -1 
Query:  111 LLALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRAG 236
            +L  QGKYEEAE L  RSLAI EKVYGPDHP VA  LNNRAG
Sbjct:  336 VLDKQGKYEEAETLCVRSLAIDEKVYGPDHPKVAIGLNNRAG 377
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.140e-9
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = -1 
Query:  114 LALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRA 233
            +  QGKYEEA PLY+RSLAI EKV GPDHP VA +LNNRA
Sbjct:  795 ITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.190e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = -1 
Query:  114 LLALQGKYEEAEPLYKRSLAIVEKVYGPDHPAVATALNNRA 236
            LL  QGKY+E +PLY R++ I EK  GPDHPA+AT+LNNRA
Sbjct:   46 LLESQGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRA 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15439.4018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY6_9PHAE2.610e-1191.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G180_ECTSI8.030e-1178.05TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0013D295289.360e-1176.32tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5J9V8_9PHAE1.740e-1083.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLW6_9PHAE2.320e-1063.27NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI1.570e-973.17NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
UPI0013D05A061.970e-976.32tetratricopeptide repeat-containing protein n=1 Ta... [more]
D7G1L3_ECTSI2.100e-976.19Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE2.140e-975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW2_ECTSI3.190e-965.85TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15439contigH-canaliculatus_F_contig15439:124..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15439.4018.1prot_H-canaliculatus_F_contig15439.4018.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15439 201..1019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.9625542-UTR-H-canaliculatus_F_contig15439:123..2001622929279.9625542-UTR-H-canaliculatus_F_contig15439:123..200Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15439 124..200 +
1696845748.5502431-UTR-H-canaliculatus_F_contig15439:123..2001696845748.5502431-UTR-H-canaliculatus_F_contig15439:123..200Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15439 124..200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.9751463-CDS-H-canaliculatus_F_contig15439:200..2361622929279.9751463-CDS-H-canaliculatus_F_contig15439:200..236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 201..236 +
1696845748.5588417-CDS-H-canaliculatus_F_contig15439:200..2361696845748.5588417-CDS-H-canaliculatus_F_contig15439:200..236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 201..236 +
1622929279.9907162-CDS-H-canaliculatus_F_contig15439:845..10191622929279.9907162-CDS-H-canaliculatus_F_contig15439:845..1019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 846..1019 +
1696845748.5676816-CDS-H-canaliculatus_F_contig15439:845..10191696845748.5676816-CDS-H-canaliculatus_F_contig15439:845..1019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 846..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15439.4018.1

>prot_H-canaliculatus_F_contig15439.4018.1 ID=prot_H-canaliculatus_F_contig15439.4018.1|Name=mRNA_H-canaliculatus_F_contig15439.4018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MMRRNKCSTTPPRPVVERCCHCRVIRTVHLLNNSQRALVQWLGFLVLALK
SKQWVLVRERSSANENGSSI
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mRNA from alignment at H-canaliculatus_F_contig15439:124..1019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15439.4018.1 ID=mRNA_H-canaliculatus_F_contig15439.4018.1|Name=mRNA_H-canaliculatus_F_contig15439.4018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=896bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15439:124..1019+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGTCGGCTTCGTCATACTTGCCCTAGAAATAAAGAGACAGCGGGATGG
GCATGAAGTCAACGTGAGCATGACATAATGATGCGGAGGAACAAATGCTC
AACAACCCCGCCCGGTTGTTGAGCGACTGGGCTACATCCGGATGCTCCGG
ACCCAGCACCTTCTCTCGAATAGCCTGTGACCGCTCATGTAGCGGCTCGG
CGTCGTCGTACTTGCCCTGAATAGTAAGCGGTGGGTTCTTGTGAGGGAGC
GGTCCTCTAGGAACTGAACGATTCATCAAGTAATGTGGACCCCACGAAGT
TTCCCGGAAAGTTCTGACGGCTCTCACCTGGGCTCTCAACAACAGCGCCC
GGTTGTTGAGCACAGTTGCCACTGTTGGGTGATCAGGACCGTACACCTTC
TCAACAATAGCCAGCGAGCGCTTGTACAGTGGCTCGGCTTCCTCGTACTA
GCCTACGAAAAGTCCTGGAAAAATCATCTTCTAGAAGCATCGAGAAGCAC
GGTTTGGCTCTCACCTGCCTCTTCAACAACCCCGCCCGGTTGTTGAGCCA
CACGGCCAGATCTGGATGCTCTGGGCCCAGTGCTTTCTCTCCGATAGCGA
TAGCTCTAACGTACAACGGCTCCGCCTCGTTATACTTGCCCTATAACGCG
AGCGGGCGACAAAAGGGGCGTGTGCTCAAGGTGGGAATAGTGCAATGCGG
AGGAACATTTTCTCAACAACCGCGCCCGGTTGTTGAGCGCTGTTGCCACT
GCAGGGTGATCAGGACCGTACACCTTCTCAACAATAGCCAGCGAGCGCTT
GTACAGTGGCTCGGCTTCCTCGTACTTGCCCTGAAGAGCAAGCAGTGGGT
TCTTGTGAGGGAGCGATCCTCTGCAAACGAAAACGGTTCATCGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15439:124..1019+

>mRNA_H-canaliculatus_F_contig15439.4018.1 ID=mRNA_H-canaliculatus_F_contig15439.4018.1|Name=mRNA_H-canaliculatus_F_contig15439.4018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15439:124..1019+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCGGAGGAACAAATGCTCAACAACCCCGCCCATGATGCGGAGGAA
CAAATGCTCAACAACCCCGCCCCGCCCGGTTGTTGAGCGCTGTTGCCACT
GCAGGGTGATCAGGACCGTACACCTTCTCAACAATAGCCAGCGAGCGCTT
GTACAGTGGCTCGGCTTCCTCGTACTTGCCCTGAAGAGCAAGCAGTGGGT
TCTTGTGAGGGAGCGATCCTCTGCAAACGAAAACGGTTCATCGATACGCC
CGGTTGTTGAGCGCTGTTGCCACTGCAGGGTGATCAGGACCGTACACCTT
CTCAACAATAGCCAGCGAGCGCTTGTACAGTGGCTCGGCTTCCTCGTACT
TGCCCTGAAGAGCAAGCAGTGGGTTCTTGTGAGGGAGCGATCCTCTGCAA
ACGAAAACGGTTCATCGATA
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