mRNA_H-canaliculatus_F_contig15431.4015.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15431.4015.1
Unique NamemRNA_H-canaliculatus_F_contig15431.4015.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.410e-20
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    7 HSYEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            HSYE DAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF
Sbjct:  712 HSYEEDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 753
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: B6K3U5_SCHJY (Histone demethylase Jmj2 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K3U5_SCHJY)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 DHSYEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            D  Y  D WNLN +PT++ SLLQ + +QI G+ VPWLYVGM F
Sbjct:  334 DDPYASDEWNLNRMPTTEKSLLQHIHSQISGITVPWLYVGMCF 376
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A7S3GTK1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTK1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.180e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y    WNLN +PT+ GSLLQ+L T I G+ VPWLYVGM F
Sbjct:   88 YATTGWNLNNIPTTKGSLLQYLRTPINGINVPWLYVGMLF 127
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A067CB37_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CB37_SAPPC)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y    WNL  LP  +GSLLQ+L   I+GVMVPWLYVGMAF
Sbjct:  570 YARSPWNLTNLPKLNGSLLQYLDEDIKGVMVPWLYVGMAF 609
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A1V9ZBL1_9STRA (Histone demethylase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBL1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y    WNL  LP   GSLLQ+L   I+GVMVPWLYVGMAF
Sbjct:  564 YARSPWNLTNLPKLHGSLLQYLDEDIKGVMVPWLYVGMAF 603
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A1W0A526_9STRA (Histone demethylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A526_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y    WNL  LP  +GSLLQ+L   I+GVMVPW+YVGMAF
Sbjct:  557 YAQSPWNLTNLPKLNGSLLQYLDEDIKGVMVPWIYVGMAF 596
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A2R5GRK6_9STRA (Lysine-specific demethylase JMJ18 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRK6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y  D WNLN  P   GSLLQ++G  I GV+VPWLY+GM F
Sbjct:  712 YRNDPWNLNNFPKLPGSLLQYVGEDITGVIVPWLYMGMFF 751
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A5K1D8F6_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1D8F6_9MAGN)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-8
Identity = 24/40 (60.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   13 YEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            Y    WNLN LP   GSLL F  T I GV+VPWLY+GM F
Sbjct:   31 YVKSGWNLNNLPRLAGSLLSFEQTDISGVLVPWLYIGMCF 70
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A443R533_9ACAR ([Histone H3]-trimethyl-L-lysine(4) demethylase n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443R533_9ACAR)

HSP 1 Score: 56.6 bits (135), Expect = 4.170e-8
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 DHSYEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            D+ Y   AWNLN LP  +GS+ +++ T I G+++PW+YVGM F
Sbjct:  502 DYEYIDHAWNLNNLPVVEGSVFKYINTNISGMIIPWMYVGMCF 544
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BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Match: A0A177VVR5_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VVR5_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 4.170e-8
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 DHSYEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAF 132
            ++ Y  DAWNLN LP + GSLL+++ + I G+ VPW+YVGM F
Sbjct:  836 ENPYSKDAWNLNNLPITAGSLLRYIKSDISGMTVPWIYVGMMF 878
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15431.4015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES6_ECTSI1.410e-2097.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B6K3U5_SCHJY3.410e-958.14Histone demethylase Jmj2 n=1 Tax=Schizosaccharomyc... [more]
A0A7S3GTK1_9STRA1.180e-862.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A067CB37_SAPPC1.630e-865.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZBL1_9STRA3.050e-865.00Histone demethylase n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A1W0A526_9STRA3.050e-862.50Histone demethylase n=1 Tax=Thraustotheca clavata ... [more]
A0A2R5GRK6_9STRA3.050e-860.00Lysine-specific demethylase JMJ18 n=1 Tax=Hondaea ... [more]
A0A5K1D8F6_9MAGN3.560e-860.00Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A443R533_9ACAR4.170e-848.84[Histone H3]-trimethyl-L-lysine(4) demethylase n=2... [more]
A0A177VVR5_9BASI4.170e-853.49Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15431contigH-canaliculatus_F_contig15431:1685..1822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue5.8e-17
Seed eggNOG ortholog2880.D8LES6
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Ec32 ortholog descriptionJumonji ARID and zinc finger domain protein
Ec32 orthologEc-21_005410.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.7744107-CDS-H-canaliculatus_F_contig15431:1684..18221622929279.7744107-CDS-H-canaliculatus_F_contig15431:1684..1822Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15431 1685..1822 +
1696845748.48261-CDS-H-canaliculatus_F_contig15431:1684..18221696845748.48261-CDS-H-canaliculatus_F_contig15431:1684..1822Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15431 1685..1822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15431.4015.1prot_H-canaliculatus_F_contig15431.4015.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15431 1685..1822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15431.4015.1

>prot_H-canaliculatus_F_contig15431.4015.1 ID=prot_H-canaliculatus_F_contig15431.4015.1|Name=mRNA_H-canaliculatus_F_contig15431.4015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
QDHSYEGDAWNLNCLPTSDGSLLQFLGTQIQGVMVPWLYVGMAFR*
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mRNA from alignment at H-canaliculatus_F_contig15431:1685..1822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15431.4015.1 ID=mRNA_H-canaliculatus_F_contig15431.4015.1|Name=mRNA_H-canaliculatus_F_contig15431.4015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15431:1685..1822+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACCACTCGTACGAGGGCGACGCTTGGAACCTCAACTGCCTGCCAAC
TTCCGATGGGTCCCTGCTGCAGTTTTTGGGGACTCAGATCCAGGGCGTGA
TGGTTCCGTGGCTGTACGTGGGTATGGCCTTCAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15431:1685..1822+

>mRNA_H-canaliculatus_F_contig15431.4015.1 ID=mRNA_H-canaliculatus_F_contig15431.4015.1|Name=mRNA_H-canaliculatus_F_contig15431.4015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15431:1685..1822+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACCACTCGTACGAGGGCGACGCTTGGAACCTCAACTGCCTGCCAAC
TTCCGATGGGTCCCTGCTGCAGTTTTTGGGGACTCAGATCCAGGGCGTGA
TGGTTCCGTGGCTGTACGTGGGTATGGCCTTCAGGTGACAGGACCACTCG
TACGAGGGCGACGCTTGGAACCTCAACTGCCTGCCAACTTCCGATGGGTC
CCTGCTGCAGTTTTTGGGGACTCAGATCCAGGGCGTGATGGTTCCGTGGC
TGTACGTGGGTATGGCCTTCAGGTGA
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