mRNA_H-canaliculatus_F_contig15427.4010.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15427.4010.1
Unique NamemRNA_H-canaliculatus_F_contig15427.4010.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15427.4010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15427contigH-canaliculatus_F_contig15427:1179..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size428
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.4991608-CDS-H-canaliculatus_F_contig15427:1178..15231622929279.4991608-CDS-H-canaliculatus_F_contig15427:1178..1523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15427 1179..1523 +
1696845748.407864-CDS-H-canaliculatus_F_contig15427:1178..15231696845748.407864-CDS-H-canaliculatus_F_contig15427:1178..1523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15427 1179..1523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.5208967-UTR-H-canaliculatus_F_contig15427:1523..16051622929279.5208967-UTR-H-canaliculatus_F_contig15427:1523..1605Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15427 1524..1605 +
1696845748.417731-UTR-H-canaliculatus_F_contig15427:1523..16051696845748.417731-UTR-H-canaliculatus_F_contig15427:1523..1605Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15427 1524..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15427.4010.1prot_H-canaliculatus_F_contig15427.4010.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15427 1179..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15427.4010.1

>prot_H-canaliculatus_F_contig15427.4010.1 ID=prot_H-canaliculatus_F_contig15427.4010.1|Name=mRNA_H-canaliculatus_F_contig15427.4010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
SCRTTTSTSLGVTFRDRTAVVPRSQLCQGCSFAEVAVLPRLQVCQGCRFT
LTGGCGKQWYDRQDGWQERGRAAGGRRRSLSTTFDSCGESSDATAVGAHP
SQERTDGTPTALSP*
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mRNA from alignment at H-canaliculatus_F_contig15427:1179..1605+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15427.4010.1 ID=mRNA_H-canaliculatus_F_contig15427.4010.1|Name=mRNA_H-canaliculatus_F_contig15427.4010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=427bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15427:1179..1605+ (Hapterophycus canaliculatus Oshoro5f female)
AGTTGCCGGACGACTACGAGTACTTCGCTCGGGGTGACATTCCGAGACCG
AACAGCAGTTGTGCCAAGGTCGCAGTTGTGCCAGGGTTGCAGTTTTGCCG
AGGTTGCAGTTTTGCCGAGGTTGCAGGTGTGCCAAGGATGCAGGTTTACC
CTTACGGGCGGTTGCGGAAAACAATGGTACGATCGGCAGGACGGATGGCA
GGAACGCGGTAGAGCGGCGGGCGGCCGGAGGCGAAGCCTTTCGACTACTT
TTGACTCGTGCGGCGAGTCTTCCGACGCAACAGCAGTTGGGGCACATCCG
TCACAAGAACGAACCGATGGCACACCTACCGCCCTATCGCCCTGACCTAT
CATCCACCCCTTCATGGGCTGTTGGCTCCAAAGTCTTCCAACGCGGCCGA
TCTTCCAGCACCTACAACCAACCAACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15427:1179..1605+

>mRNA_H-canaliculatus_F_contig15427.4010.1 ID=mRNA_H-canaliculatus_F_contig15427.4010.1|Name=mRNA_H-canaliculatus_F_contig15427.4010.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15427:1179..1605+ (Hapterophycus canaliculatus Oshoro5f female)
AGTTGCCGGACGACTACGAGTACTTCGCTCGGGGTGACATTCCGAGACCG
AACAGCAGTTGTGCCAAGGTCGCAGTTGTGCCAGGGTTGCAGTTTTGCCG
AGGTTGCAGTTTTGCCGAGGTTGCAGGTGTGCCAAGGATGCAGGTTTACC
CTTACGGGCGGTTGCGGAAAACAATGGTACGATCGGCAGGACGGATGGCA
GGAACGCGGTAGAGCGGCGGGCGGCCGGAGGCGAAGCCTTTCGACTACTT
TTGACTCGTGCGGCGAGTCTTCCGACGCAACAGCAGTTGGGGCACATCCG
TCACAAGAACGAACCGATGGCACACCTACCGCCCTATCGCCCTGAAGTTG
CCGGACGACTACGAGTACTTCGCTCGGGGTGACATTCCGAGACCGAACAG
CAGTTGTGCCAAGGTCGCAGTTGTGCCAGGGTTGCAGTTTTGCCGAGGTT
GCAGTTTTGCCGAGGTTGCAGGTGTGCCAAGGATGCAGGTTTACCCTTAC
GGGCGGTTGCGGAAAACAATGGTACGATCGGCAGGACGGATGGCAGGAAC
GCGGTAGAGCGGCGGGCGGCCGGAGGCGAAGCCTTTCGACTACTTTTGAC
TCGTGCGGCGAGTCTTCCGACGCAACAGCAGTTGGGGCACATCCGTCACA
AGAACGAACCGATGGCACACCTACCGCCCTATCGCCCTGA
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