mRNA_H-canaliculatus_F_contig15427.4009.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15427.4009.1
Unique NamemRNA_H-canaliculatus_F_contig15427.4009.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15427.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15427contigH-canaliculatus_F_contig15427:126..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size316
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.4386067-UTR-H-canaliculatus_F_contig15427:125..1371622929279.4386067-UTR-H-canaliculatus_F_contig15427:125..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15427 126..137 +
1696845748.3800294-UTR-H-canaliculatus_F_contig15427:125..1371696845748.3800294-UTR-H-canaliculatus_F_contig15427:125..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15427 126..137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.4522896-CDS-H-canaliculatus_F_contig15427:137..4401622929279.4522896-CDS-H-canaliculatus_F_contig15427:137..440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15427 138..440 +
1696845748.3957944-CDS-H-canaliculatus_F_contig15427:137..4401696845748.3957944-CDS-H-canaliculatus_F_contig15427:137..440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15427 138..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15427.4009.1prot_H-canaliculatus_F_contig15427.4009.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15427 138..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15427.4009.1

>prot_H-canaliculatus_F_contig15427.4009.1 ID=prot_H-canaliculatus_F_contig15427.4009.1|Name=mRNA_H-canaliculatus_F_contig15427.4009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MPLFLFWFIPLCPPLWPETRKRTATRGSARRRRRLLRRRRPFPPPEIQGI
QGVYSARQAFQSLHKAGTKRKEMCREGLVEGTSGGEFARLRVRGRAAAGL
V
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mRNA from alignment at H-canaliculatus_F_contig15427:126..440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15427.4009.1 ID=mRNA_H-canaliculatus_F_contig15427.4009.1|Name=mRNA_H-canaliculatus_F_contig15427.4009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=315bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15427:126..440+ (Hapterophycus canaliculatus Oshoro5f female)
CTCTCGTTTGCGATGCCGTTGTTCTTGTTCTGGTTTATCCCGCTATGTCC
GCCTCTATGGCCTGAAACGAGGAAGAGGACAGCAACACGTGGTTCTGCGC
GTCGGAGAAGACGGCTGCTTCGCAGACGCAGACCGTTTCCCCCTCCAGAA
ATTCAGGGCATTCAGGGCGTTTATTCCGCGCGACAAGCTTTTCAGAGCCT
TCACAAAGCCGGCACGAAGAGGAAAGAAATGTGCAGGGAGGGACTCGTGG
AGGGAACCTCAGGGGGCGAATTCGCGCGACTGAGGGTAAGGGGACGAGCG
GCCGCGGGCCTCGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15427:126..440+

>mRNA_H-canaliculatus_F_contig15427.4009.1 ID=mRNA_H-canaliculatus_F_contig15427.4009.1|Name=mRNA_H-canaliculatus_F_contig15427.4009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15427:126..440+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGTTGTTCTTGTTCTGGTTTATCCCGCTATGTCCGCCTCTATGGCC
TGAAACGAGGAAGAGGACAGCAACACGTGGTTCTGCGCGTCGGAGAAGAC
GGCTGCTTCGCAGACGCAGACCGTTTCCCCCTCCAGAAATTCAGGGCATT
CAGGGCGTTTATTCCGCGCGACAAGCTTTTCAGAGCCTTCACAAAGCCGG
CACGAAGAGGAAAGAAATGTGCAGGGAGGGACTCGTGGAGGGAACCTCAG
GGGGCGAATTCGCGCGACTGAGGGTAAGGGGACGAGCGGCCGCGGGCCTC
GTTATGCCGTTGTTCTTGTTCTGGTTTATCCCGCTATGTCCGCCTCTATG
GCCTGAAACGAGGAAGAGGACAGCAACACGTGGTTCTGCGCGTCGGAGAA
GACGGCTGCTTCGCAGACGCAGACCGTTTCCCCCTCCAGAAATTCAGGGC
ATTCAGGGCGTTTATTCCGCGCGACAAGCTTTTCAGAGCCTTCACAAAGC
CGGCACGAAGAGGAAAGAAATGTGCAGGGAGGGACTCGTGGAGGGAACCT
CAGGGGGCGAATTCGCGCGACTGAGGGTAAGGGGACGAGCGGCCGCGGGC
CTCGTT
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