mRNA_H-canaliculatus_F_contig15413.4004.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15413.4004.1
Unique NamemRNA_H-canaliculatus_F_contig15413.4004.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: J0DFI6_9BIFI (Cellulase domain-containing protein n=2 Tax=Scardovia wiggsiae TaxID=230143 RepID=J0DFI6_9BIFI)

HSP 1 Score: 52.0 bits (123), Expect = 1.860e-6
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   55 SRYGLKVLLDIHAIAGSQNGFDNSGQVG 138
            +RYGLK+LLD+H + GSQNGFDN GQ+G
Sbjct:  121 NRYGLKILLDLHTVPGSQNGFDNGGQIG 148
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: D7G419_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G419_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-6
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   49 LFSRYGLKVLLDIHAIAGSQNGFDNSGQV 135
            L  RYG++VLLDIHAIA SQNGFDNSGQ 
Sbjct:  184 LCRRYGIRVLLDIHAIANSQNGFDNSGQA 212
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: Q6FSM1_CANGA (Cellulase domain-containing protein n=3 Tax=Opisthokonta TaxID=33154 RepID=Q6FSM1_CANGA)

HSP 1 Score: 49.7 bits (117), Expect = 1.220e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 PSIGAVPSMWSDGSSFLFSRYGLKVLLDIHAIAGSQNGFDNSGQ 132
            P +  V   + D +    S+YGLKV +D+H  AGSQNGFDNSGQ
Sbjct:  122 PYVTGVQEQYLDNAIEWASKYGLKVWVDLHGAAGSQNGFDNSGQ 165
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A7S3FSI9_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FSI9_9SPIT)

HSP 1 Score: 49.7 bits (117), Expect = 1.220e-5
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   58 RYGLKVLLDIHAIAGSQNGFDNSGQV 135
            +YG+KVL+D+HA+ GSQNGFDNSGQ 
Sbjct:  133 KYGIKVLMDVHAVKGSQNGFDNSGQT 158
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: R1DQK0_EMIHU (Cellulase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DQK0_EMIHU)

HSP 1 Score: 48.9 bits (115), Expect = 2.290e-5
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   49 LFSRYGLKVLLDIHAIAGSQNGFDNSGQV 135
            L  +YGL+ LLD+HA+ GSQNGFDNSGQ 
Sbjct:  169 LLRKYGLRALLDVHAMQGSQNGFDNSGQA 197
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A0M0J8Y9_9EUKA (Glucan-beta n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8Y9_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 3.140e-5
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   49 LFSRYGLKVLLDIHAIAGSQNGFDNSGQV 135
            L S+Y +K LLDIHA+ GSQNGFDNSGQ 
Sbjct:  169 LCSKYKIKALLDIHAVRGSQNGFDNSGQA 197
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A7S0AYM7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYM7_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.290e-5
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   28 WSDGSSFLFSR-------YGLKVLLDIHAIAGSQNGFDNSGQV 135
            W DG    F+R       YGLKV+ DIH   GSQNGFDNSGQ+
Sbjct:  138 WVDGDWQYFARAVGWCRKYGLKVVADIHTAPGSQNGFDNSGQL 180
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A8J6C6R7_DIALT (X8 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6R7_DIALT)

HSP 1 Score: 48.1 bits (113), Expect = 4.300e-5
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   49 LFSRYGLKVLLDIHAIAGSQNGFDNSGQ 132
            L  +YGLKVLLDIHA+ GSQNG DNSG+
Sbjct:  223 LCGKYGLKVLLDIHAVEGSQNGLDNSGR 250
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A7S3WLK0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WLK0_9SPIT)

HSP 1 Score: 47.8 bits (112), Expect = 5.850e-5
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   58 RYGLKVLLDIHAIAGSQNGFDNSGQV 135
            +Y +KVLLD+HA+ GSQNGFDNSGQ 
Sbjct:  115 KYNIKVLLDVHALKGSQNGFDNSGQA 140
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BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Match: A0A177VL67_9BASI (Cellulase domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VL67_9BASI)

HSP 1 Score: 47.4 bits (111), Expect = 8.030e-5
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   58 RYGLKVLLDIHAIAGSQNGFDNSGQ 132
            +YGLKV++D+H + GSQNGFDNSGQ
Sbjct:  174 KYGLKVMIDLHGVPGSQNGFDNSGQ 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15413.4004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
J0DFI6_9BIFI1.860e-671.43Cellulase domain-containing protein n=2 Tax=Scardo... [more]
D7G419_ECTSI3.490e-679.31Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
Q6FSM1_CANGA1.220e-552.27Cellulase domain-containing protein n=3 Tax=Opisth... [more]
A0A7S3FSI9_9SPIT1.220e-573.08Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
R1DQK0_EMIHU2.290e-568.97Cellulase domain-containing protein n=3 Tax=Emilia... [more]
A0A0M0J8Y9_9EUKA3.140e-572.41Glucan-beta n=1 Tax=Chrysochromulina tobinii TaxID... [more]
A0A7S0AYM7_9STRA4.290e-555.81Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A8J6C6R7_DIALT4.300e-575.00X8 domain-containing protein n=2 Tax=Diacronema lu... [more]
A0A7S3WLK0_9SPIT5.850e-573.08Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A177VL67_9BASI8.030e-572.00Cellulase domain-containing protein n=2 Tax=Tillet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15413contigH-canaliculatus_F_contig15413:110..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size117
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.4768658-UTR-H-canaliculatus_F_contig15413:109..1331622929278.4768658-UTR-H-canaliculatus_F_contig15413:109..133Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15413 110..133 +
1696845747.8792534-UTR-H-canaliculatus_F_contig15413:109..1331696845747.8792534-UTR-H-canaliculatus_F_contig15413:109..133Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15413 110..133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.492735-CDS-H-canaliculatus_F_contig15413:133..2501622929278.492735-CDS-H-canaliculatus_F_contig15413:133..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15413 134..250 +
1696845747.896405-CDS-H-canaliculatus_F_contig15413:133..2501696845747.896405-CDS-H-canaliculatus_F_contig15413:133..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15413 134..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15413.4004.1prot_H-canaliculatus_F_contig15413.4004.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15413 134..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15413.4004.1

>prot_H-canaliculatus_F_contig15413.4004.1 ID=prot_H-canaliculatus_F_contig15413.4004.1|Name=mRNA_H-canaliculatus_F_contig15413.4004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=39bp
MWSDGSSFLFSRYGLKVLLDIHAIAGSQNGFDNSGQVG*
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mRNA from alignment at H-canaliculatus_F_contig15413:110..250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15413.4004.1 ID=mRNA_H-canaliculatus_F_contig15413.4004.1|Name=mRNA_H-canaliculatus_F_contig15413.4004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15413:110..250+ (Hapterophycus canaliculatus Oshoro5f female)
CCGTCGATCGGTGCGGTTCCTTCAATGTGGTCGGATGGATCGTCATTCCT
TTTCTCCAGGTATGGTCTTAAGGTGCTGCTGGACATTCACGCTATCGCTG
GTAGCCAGAACGGCTTCGACAATTCGGGCCAGGTGGGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15413:110..250+

>mRNA_H-canaliculatus_F_contig15413.4004.1 ID=mRNA_H-canaliculatus_F_contig15413.4004.1|Name=mRNA_H-canaliculatus_F_contig15413.4004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15413:110..250+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTCGGATGGATCGTCATTCCTTTTCTCCAGGTATGGTCTTAAGGT
GCTGCTGGACATTCACGCTATCGCTGGTAGCCAGAACGGCTTCGACAATT
CGGGCCAGGTGGGTTGAATGTGGTCGGATGGATCGTCATTCCTTTTCTCC
AGGTATGGTCTTAAGGTGCTGCTGGACATTCACGCTATCGCTGGTAGCCA
GAACGGCTTCGACAATTCGGGCCAGGTGGGTTGA
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