mRNA_H-canaliculatus_F_contig15404.4001.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15404.4001.1
Unique NamemRNA_H-canaliculatus_F_contig15404.4001.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15404.4001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15404contigH-canaliculatus_F_contig15404:691..1969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.2044811-CDS-H-canaliculatus_F_contig15404:691..13061622929278.2044811-CDS-H-canaliculatus_F_contig15404:691..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15404 692..1306 -
1696845747.7542415-CDS-H-canaliculatus_F_contig15404:691..13061696845747.7542415-CDS-H-canaliculatus_F_contig15404:691..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15404 692..1306 -
1622929278.2337265-CDS-H-canaliculatus_F_contig15404:1933..19691622929278.2337265-CDS-H-canaliculatus_F_contig15404:1933..1969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15404 1934..1969 -
1696845747.7634344-CDS-H-canaliculatus_F_contig15404:1933..19691696845747.7634344-CDS-H-canaliculatus_F_contig15404:1933..1969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15404 1934..1969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15404.4001.1prot_H-canaliculatus_F_contig15404.4001.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15404 692..1969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15404.4001.1

>prot_H-canaliculatus_F_contig15404.4001.1 ID=prot_H-canaliculatus_F_contig15404.4001.1|Name=mRNA_H-canaliculatus_F_contig15404.4001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
GGQGGSGGASQQAAAPPEDPAAAAQRAEKQRMAAMLFGGTGPPTSARPAP
SPAAPRPGRISTSAAAPTTAASSLSGAGASGSNSASSTPRKLKEEASPAP
GAAAQPAVDLLDFMSMGDDATPSLAAPPAGATSATNGAANGRSSSPPDHL
GMDLLGGGGGGGSGNANGAVPSSSPRTTQTLDDLLGGGSGGGSGAPVQGP
TNGRRNSSGGTGGGEAW
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mRNA from alignment at H-canaliculatus_F_contig15404:691..1969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15404.4001.1 ID=mRNA_H-canaliculatus_F_contig15404.4001.1|Name=mRNA_H-canaliculatus_F_contig15404.4001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15404:691..1969- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGCAGGGCGGGAGTGGCGGCGCTTCACAGCAGGTGAAAGTGTGGCC
GAGTCACACCAAAGCTGTGCGTTGACGCTTGCGTCATTTCTACATGAAGA
GCCCGGTGCTGTTACTCGCTACTCTTCTTCTCTGATGATTTGCTTGTGTA
TACACGAGCTTGGTTTTGAGAGATGATATCGCTATCGATAGTGCTGCTGC
CGGTTGCTTCCGTCGGCGGGTCGGTCAAGTCGACTGCACACATCAAGGGT
CATATCTACGGGTTTGGACTTGGGGTATGAGGTTGGCCGTGGTGTTGATT
CCGCGTGCGGCTCCTGCGAGGTTGGTTCTTTTGAAAGGGTTGCAAGAGTT
CCATAGATTTCGTAGATTTCGTTTGTCGTAGATTTCGCTTGAGCAGGCGG
AGCGCGCCCCCCTTCGCTGCGTGCTCGCGTCATGATCTTGTTTTTGAACG
CCCGCACAACTCACCTCCAACCGCCCTGGCGTCGTCTTCTGGCCGCATTG
TTCGTCGCCCATGGAGATGGTGGTTTTGTCCTCTCCCTCAAACGTTCCGT
TACGGGGACACAATCGCGCATGCAAACAGGCAACTCCACACACACACACA
CACACACACTGAAGCACACTTTCACACGTAAACTCGTGCGGTTAACCATT
ACCGCCGTTCCAGGCGGCAGCGCCGCCGGAAGATCCGGCGGCGGCCGCGC
AGCGAGCAGAGAAGCAGAGGATGGCGGCGATGCTCTTTGGCGGGACCGGC
CCGCCGACATCGGCGAGGCCGGCGCCATCGCCGGCGGCACCCCGCCCGGG
CCGAATCTCGACGTCCGCTGCCGCACCCACTACCGCGGCATCCTCCCTAT
CCGGGGCAGGGGCTTCTGGCTCGAACTCGGCGTCTTCAACCCCGCGGAAA
CTCAAGGAAGAGGCATCTCCTGCCCCGGGGGCTGCCGCCCAACCGGCAGT
CGACCTGCTCGATTTCATGAGCATGGGGGACGACGCGACTCCTTCTCTTG
CTGCTCCGCCTGCTGGCGCGACCTCGGCCACCAACGGCGCGGCGAACGGC
CGCTCTTCTTCGCCCCCCGACCACCTGGGCATGGACCTGTTGGGCGGCGG
CGGCGGCGGCGGCAGCGGTAATGCCAACGGTGCCGTCCCCTCTTCCTCCC
CACGCACGACTCAGACGCTGGACGATCTGCTGGGAGGAGGTAGCGGGGGG
GGCAGCGGGGCGCCCGTCCAGGGCCCGACGAACGGTCGCCGCAACAGCAG
CGGCGGCACCGGCGGGGGGGAAGCTTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15404:691..1969-

>mRNA_H-canaliculatus_F_contig15404.4001.1 ID=mRNA_H-canaliculatus_F_contig15404.4001.1|Name=mRNA_H-canaliculatus_F_contig15404.4001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15404:691..1969- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGCAGGGCGGGAGTGGCGGCGCTTCACAGCAGGGAGGGCAGGGCGG
GAGTGGCGGCGCTTCACAGCAGGCGGCAGCGCCGCCGGAAGATCCGGCGG
CGGCCGCGCAGCGAGCAGAGAAGCAGAGGATGGCGGCGATGCTCTTTGGC
GGGACCGGCCCGCCGACATCGGCGAGGCCGGCGCCATCGCCGGCGGCACC
CCGCCCGGGCCGAATCTCGACGTCCGCTGCCGCACCCACTACCGCGGCAT
CCTCCCTATCCGGGGCAGGGGCTTCTGGCTCGAACTCGGCGTCTTCAACC
CCGCGGAAACTCAAGGAAGAGGCATCTCCTGCCCCGGGGGCTGCCGCCCA
ACCGGCAGTCGACCTGCTCGATTTCATGAGCATGGGGGACGACGCGACTC
CTTCTCTTGCTGCTCCGCCTGCTGGCGCGACCTCGGCCACCAACGGCGCG
GCGAACGGCCGCTCTTCTTCGCCCCCCGACCACCTGGGCATGGACCTGTT
GGGCGGCGGCGGCGGCGGCGGCAGCGGTAATGCCAACGGTGCCGTCCCCT
CTTCCTCCCCACGCACGACTCAGACGCTGGACGATCTGCTGGGAGGAGGT
AGCGGGGGGGGCAGCGGGGCGCCCGTCCAGGGCCCGACGAACGGTCGCCG
CAACAGCAGCGGCGGCACCGGCGGGGGGGAAGCTTGGGCGGCAGCGCCGC
CGGAAGATCCGGCGGCGGCCGCGCAGCGAGCAGAGAAGCAGAGGATGGCG
GCGATGCTCTTTGGCGGGACCGGCCCGCCGACATCGGCGAGGCCGGCGCC
ATCGCCGGCGGCACCCCGCCCGGGCCGAATCTCGACGTCCGCTGCCGCAC
CCACTACCGCGGCATCCTCCCTATCCGGGGCAGGGGCTTCTGGCTCGAAC
TCGGCGTCTTCAACCCCGCGGAAACTCAAGGAAGAGGCATCTCCTGCCCC
GGGGGCTGCCGCCCAACCGGCAGTCGACCTGCTCGATTTCATGAGCATGG
GGGACGACGCGACTCCTTCTCTTGCTGCTCCGCCTGCTGGCGCGACCTCG
GCCACCAACGGCGCGGCGAACGGCCGCTCTTCTTCGCCCCCCGACCACCT
GGGCATGGACCTGTTGGGCGGCGGCGGCGGCGGCGGCAGCGGTAATGCCA
ACGGTGCCGTCCCCTCTTCCTCCCCACGCACGACTCAGACGCTGGACGAT
CTGCTGGGAGGAGGTAGCGGGGGGGGCAGCGGGGCGCCCGTCCAGGGCCC
GACGAACGGTCGCCGCAACAGCAGCGGCGGCACCGGCGGGGGGGAAGCTT
GG
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