mRNA_H-canaliculatus_F_contig154.3994.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig154.3994.1
Unique NamemRNA_H-canaliculatus_F_contig154.3994.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.780e-99
Identity = 160/183 (87.43%), Postives = 169/183 (92.35%), Query Frame = 2 
Query:  254 EAQAAMEAQIVGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            EAQ AM AQ++GPF   G CKL MVNVTATADM+C+IDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLD GS GPS+KINFDLERDR+VQNMVATTD+GFPIRLEGLVAS  G FCNYEPELFPGLIYR+  PKICFL+FVSGKV
Sbjct:  112 EAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKV 294
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 165 bits (418), Expect = 1.450e-42
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 2 
Query:  269 MEAQIVGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            +EAQ+    H   G   ++ NV AT ++ C +DLK + +RARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S      A + +ARIL KL+       N + F   ++ K+QNMV + D+ FPIRLEGL AS    FC+YEPELFPGLIYR+  PKI  L+FVSGKV
Sbjct:    9 VEAQVDLTVHP-SGIVPQLQNVVATVNLECKLDLKDIALRARNAEYNPKRFAAVIMRI---REPKSTALIFASGKMVCTGAKSEQESRLAARKYARILQKLE-------NPVIF---KEFKIQNMVGSCDVRFPIRLEGL-ASSHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKV 171
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A0L0HKX1_SPIPD (TATA-box-binding protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HKX1_SPIPD)

HSP 1 Score: 164 bits (414), Expect = 2.020e-42
Identity = 90/187 (48.13%), Postives = 120/187 (64.17%), Query Frame = 2 
Query:  242 HSTSEAQAAMEAQIVGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            HS +  Q   +A +  P     G    + N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL     G   K       D K+QN+V + D+ FPIRLEGL A   GSFC+YEPELFPGLIYR+ +PKI  L+FVSGK+
Sbjct:    3 HSVAADQIMTDAHVKPP--SASGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEEMSKLAARKYARIIQKL-----GFQAKFT-----DFKIQNIVGSCDVKFPIRLEGL-ALNHGSFCSYEPELFPGLIYRMLRPKIVLLIFVSGKI 173
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BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A5C5G0V3_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G0V3_9BASI)

HSP 1 Score: 162 bits (411), Expect = 2.160e-42
Identity = 89/178 (50.00%), Postives = 115/178 (64.61%), Query Frame = 2 
Query:  329 NVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKVSADYRNHRPTKRESEAAFFP 862
            N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TALVF +GKVVVTG++S      A + FARI+ KL     G   K       D K+QN+V + D+ FPIRLEGL A   G F +YEPELFPGLIYR+ KPK+  L+FVSGK+       R    ++ AA +P
Sbjct:    2 NIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALVFASGKVVVTGAKSEDDSRLAARKFARIIQKL-----GFETKFT-----DFKIQNIVGSCDVKFPIRLEGL-AYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAAIYP 165
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A507E7H3_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E7H3_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 2.340e-42
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 2 
Query:  329 NVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL     G   K +     D K+QN+V + D+ FPIRLEGL  S  G+FC+YEPELFPGLIYR+TKPKI  L+FVSGK+
Sbjct:   45 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEEQSKLAARKYARIVQKL-----GFQAKFS-----DFKIQNIVGSCDVKFPIRLEGLALSH-GNFCSYEPELFPGLIYRMTKPKIVLLIFVSGKI 188
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A1Y2GXQ2_9FUNG (Transcription factor TFIID-domain-containing protein n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A1Y2GXQ2_9FUNG)

HSP 1 Score: 164 bits (414), Expect = 3.600e-42
Identity = 94/208 (45.19%), Postives = 129/208 (62.02%), Query Frame = 2 
Query:  248 TSEAQAAMEAQIVGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKVSADYRNHRPTKRESEAAFFPRVT 871
            TSE QAA++  +    H   G    + N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL      P+   +F      K+QN+V + D+ FPIRLEGL A   G F +YEPELFPGLIYR+ KPKI  L+FVSGK+       R    ++  A +P +T
Sbjct:   26 TSENQAAVDNSL----HSVAGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL----GFPAKFTDF------KIQNIVGSCDVKFPIRLEGL-AYAHGPFTSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLT 215
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A0P9H129_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9H129_RHOGW)

HSP 1 Score: 163 bits (412), Expect = 1.170e-41
Identity = 96/202 (47.52%), Postives = 123/202 (60.89%), Query Frame = 2 
Query:  257 AQAAMEAQIVGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKVSADYRNHRPTKRESEAAFFP 862
            AQA  EA  V P     G    + N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TALVF +GKVVVTG++S      A + FARI+ KL     G   K       D K+QN+V + D+ FPIRLEGL A   G F +YEPELFPGLIYR+ KPK+  L+FVSGK+       R    ++ A  +P
Sbjct:   46 AQAGDEAGAVIPG--VNGIVPTLQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALVFASGKVVVTGAKSEDDARLAARKFARIIMKL-----GFETKFT-----DFKIQNIVGSCDVKFPIRLEGL-AYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKFREEIYQAFAQIYP 231
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A1L0FEV2_9ASCO (Probable TATA-box-binding protein n=4 Tax=Hanseniaspora TaxID=29832 RepID=A0A1L0FEV2_9ASCO)

HSP 1 Score: 162 bits (409), Expect = 2.200e-41
Identity = 85/159 (53.46%), Postives = 112/159 (70.44%), Query Frame = 2 
Query:  329 NVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLE-RDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+            KI FD + +D K+QN+VA+ D+ FPIRLEGL A   G+F +YEPELFPGLIYR+ KPKI  L+FVSGKV
Sbjct:   58 NIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEQDSKLASRKYARII-----------QKIGFDSKFKDFKIQNIVASCDVKFPIRLEGL-AFAHGAFSSYEPELFPGLIYRMVKPKIVLLIFVSGKV 201
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A2P6VMN0_9CHLO (TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2511126 RepID=A0A2P6VMN0_9CHLO)

HSP 1 Score: 162 bits (409), Expect = 2.630e-41
Identity = 84/161 (52.17%), Postives = 113/161 (70.19%), Query Frame = 2 
Query:  320 RMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            ++ NV AT ++ C +DLK + + ARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S A    A + +A+IL KL       S  ++F   ++ K+QNMV + D+ FPIRLEGL AS    FC+YEPELFPGLIYR+  PKI  L+FVSGKV
Sbjct:   29 QLQNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRI---REPKSTALIFHSGKMVCTGTKSEAEARTASRKYAKILQKL-------SYSVSF---KEFKIQNMVGSCDVKFPIRLEGL-ASTHAMFCSYEPELFPGLIYRMADPKIVLLIFVSGKV 175
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Match: A0A139ANU1_GONPJ (Brf1-Tbp-Dna ternary complex n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANU1_GONPJ)

HSP 1 Score: 160 bits (405), Expect = 2.730e-41
Identity = 85/161 (52.80%), Postives = 111/161 (68.94%), Query Frame = 2 
Query:  320 RMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGSSGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPELFPGLIYRLTKPKICFLVFVSGKV 802
            ++ NV AT D+   +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL   +S  S KI          QNMV +TD+ FPIRLEGL +   G+F +YEPELFPGLIYR+ KPKI  L+FVSGK+
Sbjct:   21 QLQNVVATVDLDVKLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFSSGKMVVTGAKSEDQAKLAARKYARIIQKLGFKASFKSFKI----------QNMVGSTDVKFPIRLEGL-SFAHGAFSSYEPELFPGLIYRMVKPKIVLLIFVSGKI 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig154.3994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI1.780e-9987.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D2AC59_AUXPR1.450e-4250.56Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A0L0HKX1_SPIPD2.020e-4248.13TATA-box-binding protein n=2 Tax=Spizellomyces Tax... [more]
A0A5C5G0V3_9BASI2.160e-4250.00Uncharacterized protein (Fragment) n=1 Tax=Rhodoto... [more]
A0A507E7H3_9FUNG2.340e-4253.80Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A1Y2GXQ2_9FUNG3.600e-4245.19Transcription factor TFIID-domain-containing prote... [more]
A0A0P9H129_RHOGW1.170e-4147.52Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
A0A1L0FEV2_9ASCO2.200e-4153.46Probable TATA-box-binding protein n=4 Tax=Hansenia... [more]
A0A2P6VMN0_9CHLO2.630e-4152.17TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2... [more]
A0A139ANU1_GONPJ2.730e-4152.80Brf1-Tbp-Dna ternary complex n=1 Tax=Gonapodya pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig154contigH-canaliculatus_F_contig154:41615..47974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue2e-86
Seed eggNOG ortholog2880.D7FV81
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta2-adaptin/TBP, C-terminal domain
Ec32 orthologEc-14_000120.1
Exons4
Model size3191
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig154.3994.1prot_H-canaliculatus_F_contig154.3994.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig154 44743..47841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.3045921-UTR-H-canaliculatus_F_contig154:41614..427921622929277.3045921-UTR-H-canaliculatus_F_contig154:41614..42792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 41615..42792 -
1696845747.2939687-UTR-H-canaliculatus_F_contig154:41614..427921696845747.2939687-UTR-H-canaliculatus_F_contig154:41614..42792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 41615..42792 -
1622929277.335421-UTR-H-canaliculatus_F_contig154:43741..447421622929277.335421-UTR-H-canaliculatus_F_contig154:43741..44742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 43742..44742 -
1696845747.3064475-UTR-H-canaliculatus_F_contig154:43741..447421696845747.3064475-UTR-H-canaliculatus_F_contig154:43741..44742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 43742..44742 -
1622929277.3954542-UTR-H-canaliculatus_F_contig154:47841..479741622929277.3954542-UTR-H-canaliculatus_F_contig154:47841..47974Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 47842..47974 -
1696845747.3795557-UTR-H-canaliculatus_F_contig154:47841..479741696845747.3795557-UTR-H-canaliculatus_F_contig154:47841..47974Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 47842..47974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.349901-CDS-H-canaliculatus_F_contig154:44742..451421622929277.349901-CDS-H-canaliculatus_F_contig154:44742..45142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 44743..45142 -
1696845747.3160253-CDS-H-canaliculatus_F_contig154:44742..451421696845747.3160253-CDS-H-canaliculatus_F_contig154:44742..45142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 44743..45142 -
1622929277.3661976-CDS-H-canaliculatus_F_contig154:46526..467081622929277.3661976-CDS-H-canaliculatus_F_contig154:46526..46708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 46527..46708 -
1696845747.327492-CDS-H-canaliculatus_F_contig154:46526..467081696845747.327492-CDS-H-canaliculatus_F_contig154:46526..46708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 46527..46708 -
1622929277.3816898-CDS-H-canaliculatus_F_contig154:47544..478411622929277.3816898-CDS-H-canaliculatus_F_contig154:47544..47841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 47545..47841 -
1696845747.367067-CDS-H-canaliculatus_F_contig154:47544..478411696845747.367067-CDS-H-canaliculatus_F_contig154:47544..47841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 47545..47841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig154.3994.1

>prot_H-canaliculatus_F_contig154.3994.1 ID=prot_H-canaliculatus_F_contig154.3994.1|Name=mRNA_H-canaliculatus_F_contig154.3994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=293bp
MPRRGSSAGGGSSAAGAAVDSAGSRSRGSSAEGTCRHSTSEAQAAMEAQI
VGPFHKCGGCKLRMVNVTATADMRCSIDLKTVVMRARNAEYNPKRFSACI
IRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDGGS
SGPSNKINFDLERDRKVQNMVATTDLGFPIRLEGLVASKFGSFCNYEPEL
FPGLIYRLTKPKICFLVFVSGKVSADYRNHRPTKRESEAAFFPRVTCYYI
KRICHYVNTYCFVPRFALQFARGMWCKSARTTRVGTHVVNVL*
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mRNA from alignment at H-canaliculatus_F_contig154:41615..47974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig154.3994.1 ID=mRNA_H-canaliculatus_F_contig154.3994.1|Name=mRNA_H-canaliculatus_F_contig154.3994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:41615..47974- (Hapterophycus canaliculatus Oshoro5f female)
GTCACCTTTCAATTGCTGATCTCCTTCTCTGAGCTCTAAAGAATCATTGC
TGGGTTTGAGAGTCCTGGTACGTTCTTGGCTACGTCAGGTGAATCAAAAA
GTGGTGCAGCGGACAGCCCCCCTATCTGATACCATGCCACGGCGGGGAAG
TAGTGCGGGCGGGGGCTCATCGGCAGCAGGCGCAGCGGTGGATAGCGCTG
GTTCGCGTTCGCGGGGGTCCTCAGCAGAAGGTACATGTAGACATAGCACG
TCGGAGGCGCAAGCTGCCATGGAGGCTCAAATTGTCGGTCCATTCCACAA
ATGTGGCGGGTGCAAGCTGCGGATGGTCAACGTAACGGCTACCGCTGACA
TGAGGTGTTCCATCGACTTGAAGACAGTCGTTATGAGGGCGCGCAACGCC
GAGTACAACCCGAAGCGCTTCTCTGCCTGTGTAAGTGGCGACAGAGGGCT
TCCTCTGTTTCGTAGGCCATACTTTGTTGAAGAGCTCGTACGTGTTGTAG
AATCTACACGACAGGTTATCCCGATTTGCTTTCTTTGCAATTCTCGACGT
GTGTTCTTCCGGCCTCCGGCCATTTCCACGCATCCTCGAACAATCTAAGG
CATATCGTGCTTGTACAATGCCCACGGGATGCAGCAGTGCTAATGTTGGA
TTTGCAGTCGTCACGCCGTTGCGTTTCCTGTAGAGTCAGCGATTAGCAAC
GGCAGCGCAATGCAGGCCTAGTACTCGGACTATTGTACTGTAAAATGTGA
AATGTGAAACGTTAAATTTAAAATGTAAGATATGGCATCTTCTTTCTTAG
CGTAACAGGTATACGTTACAGGTATCGTGGTAGGATATTTGGCACCTACT
TTAGTTGTGATCGTGTCACGACTTTCTAGACTAGTGATCAGAGAGGTAGA
GACCATACGTGGTAGCAGCCCGTAGCGCAGCCTGAGCTACAGGAGCCATT
AACTCATAAGAAGGGAAATCAAATGTCAGATTACAGTCTAGGAGTCAGCT
GAAGCATCGAAACATGGAGGCGTCGGGACATGAGGACGTGAGGACACATC
AGCGTTACCTTCACATTCATCGGGGATTTTGCCCCCCTGCAGCAGCGTGC
CTGGCTGACCTTTGTGGCCCTTGTTTCGATCCTCGCTGTTACTTGTACAG
CTGGTCTTTTCTTGCAGTTTCCACGCACACGTGTGGATCAACGTATGGAC
CAACGTCATTTGTATCTGTTCTCTGCTCCTTTGCGTTCCGGCATCCACAT
CCGACGAAAACTGCAGATCATCCGGCTCATCAACAAGAATGAACCCAAGG
CCACCGCACTGGTGTTCAAGACGGGTAAAGTGGTTGTGACCGGGTCGAGG
AGCAACGCCTCCGTGGACTATGCTTGCAAAACGTTCGCTCGTATCCTCAG
CAAGCTCGACGGCGGTAGCAGCGGGCCATCAAACAAAATAAACTTCGAGT
GAGTCGTCCACAGTCTACGTGTACTGTGTAGTTCGGTGTTGTGTTGTCGA
GGAGGAAGGCGTGATAGCAGACGCCACCGGGTTAACCACATCGAACGTCA
CGTTTTGGTCTAAAAGCTGTGATGCGATTGCCTTTAAGTCGCGCACTTCT
TGCCGTAGGTCCTCTTCGGACTCAAAGCTTCCGCGGTTAGATCCACGTGT
TTTGGTTCGCCGATGTGGCGATCAGGATCTCTGTGGGGTATGTGATGTGT
GATCTGTGATCTGTGATGGGCGATATCTTGTGTTCACTCTAGTTTTTTGT
TTTCGCTCATGTCGACGTCGACCTGGCTTGATTGCCCTAGTGGCTTGATT
GTGGCTTGGTGGCCCTAAAAGCATACGGCGTATGGGGCATGCTGAGGACA
TAGGCGACCGTCGTAAGACAAAGAAAGACAGCCCATGTCGGGGTGATGTG
AACCCAGCACCGGAGGCGGTTCTCTCTCTTAGGTGCGGTGTGGCAAAGTA
TTCCTTTAGTGTTGTTAACATTTTTTTCAAAAAAAGGATAGAGGTCCAAA
AAGGAAAGCGAGTAGGCGAGGTAACACAAAGGCTTCCCGCGTCTCGCCTC
GGCTTGCGACACGAGGAAGAACCGAATCCAGAGCTGGGTCCTTCGTCCCC
CGACGGGGCGATATGGTCCTCCACTAAAGACCGTATCTTCCCACTCTTTG
TATGTGCACGTGTGGCCACTTCATGTCCTACCCCTGCCATCCACATAGTA
GCGTATCCTCATAGATGAACTCATGTATGTATGTACACCTCATGTGTATA
CACAAGCTGCCCTTGCCGCGTCAACAAGGGCTGTGCCTGGTGCACTATTA
GCGGGTGCGATGTCCGTCTTAGGTCTCACGTCTTACGGCTCGTTTGATCA
CGTTGTTTCTTCATTTTTTTACTTGAACACTGCATGCGCATGCGTGATCA
CAACCTGGTGCGAAACTGCACGTAGAATAGTTTAAGTTCATGCGAGTCGC
ACAAGCACATGTCAGGGTCGCCTGGAGCATCGACGGGCCGTTTGACCCAT
CGCAGCAATGCGAAAGATTGGCTATCGCTCCCCCCACATGTTTCGCTACG
GCGCTTCGCTGAGCGCTGGGTGTACGGCGTTTGGCCTCTCTTCGCCTCTT
GTCCGTATTTTTGTCCGTTCCAGCCACAAACACAACACAACGCACATACG
TGCCCCGCACCCGACCTTCGTCCGACTTGTTATATTATTTTGTCTCTCTT
TTTTTCAAGAAAGAGTCAGCAAGAGTTGTTTTTCCTCCACGGTACCAATG
ATTTTTCCGTGCATCATTTCCTCTTCATGCTCCCCTGTTACTCATCGAAT
GCCCTTCCACGTGCGCGTCATGTCTACCACAGCCTCGAAAGAGATCGCAA
GGTCCAGAACATGGTGGCCACGACGGACCTAGGGTTTCCCATACGCCTGG
AAGGCTTGGTAGCCTCGAAGTTTGGGAGCTTCTGCAACTACGAGCCCGAG
CTGTTTCCGGGTCTGATTTACCGTCTGACCAAGCCCAAGATTTGCTTTCT
CGTGTTCGTGTCAGGAAAGGTGAGCGCAGATTATCGTAACCACCGTCCAA
CCAAACGCGAAAGCGAAGCCGCTTTTTTCCCAAGGGTGACATGTTATTAT
ATTAAGCGAATATGCCATTATGTTAATACCTACTGCTTCGTGCCACGCTT
CGCGCTGCAGTTCGCACGGGGGATGTGGTGTAAGAGTGCGAGAACCACCC
GCGTGGGCACTCACGTGGTGAATGTGCTATGAGGCACATGAGGTTTTTGA
CCTCGCTGCTGTGCTGTGCTACTGCACGGTACGTTAAGACTCTCCTTCAA
ATGCGCTGCTGACTTCGTAGGTTGGTTAGTTGCACATTTTGGCTGGTTAT
GCTTGCGTACCTGATGATACGATATGATAAGATGTGGTACGACATTCTTT
CTGCCAAACACCTCGAGGGTTGTTCGACAAAACGATTGTGCGGAACACGT
GCAAAATCTTGGCAGATCAACCAGCAGAGTGTGCGCTGTGCTGTGCTGTG
CTGTGCTGTTCTCCTGTTTTCCAACAATCAATGTGCCTGCATCGATAAGT
AGGTATGTTCAGAGGCCTGTGGTGTATTAAATGTGTGAAAGGCAGAGACA
CGCCACGAGCCCTCCAGAGGAGGTGTTTTTAAAACGCTGAAGGCGTCAAG
CCAACTACGAGTTCTAGCGTTTACTCATGAATGTTCACTACTTAGGGATT
GTCCTCATTCTTCGCTGGTGGTGCATTTTTTGGGCTCCGGCTCTTCCTGC
TCCCATTCTCTCATTTTTGGACCAACGCGTCGTTTTCATGTTCACACTGC
GAGCAAGTTTACAAGTTTACACCTTCACGCCAGCACAAGTAAATACAGCC
CTTGCCCCGCTGGCCCTCCTCACCAACATCCGCTTTCTCAGCTTTCTCAA
CAGTTACTGATTTGGTGCCGGGTGAGATGTGTGCCCTGTTCAGCTGTGTT
TGCTACGCAAGTAACACTTCTGGTGCTGAAATACACGTACACGCGCGGGC
ATGAAAGGTGGTGCTGACAGGAGCAAAGAGCGTCGAACAGCTGGAGGAGG
GTTTCAAGACGATGTATCCCCTTCTACTGCTCTTCAAGAAGGCCACGGTT
TTACTGCAGACTTCCGCTCCGAAGTCTTATGCTGTGTCAAGTGCCTCGTC
AGCCAAATCATCCTACGAATCAGCTCGGAAGAAGCCAAGAACGTAGATTG
TTGATTGCTGTGAGCTGGGTGCTCGTTTTTCGGGTGAGCTGGGCTGTCGT
CTTGTCGTGTGGTCGTGTGGTTCCGTCTTGAAAGACGTACAAGGACGTTG
GACTTGGTAGGGTGGCAAGCAGGCGTCTTTCGGTGCGGATAACACATGAA
CTACATTTGACTGGTGGGCTGTTTCCCTAGCTTCATAGCACCCTTGTTCG
TGTCTCGGAAATGAACGGATCTTGGTCGCACTGACTCTTTACTGCGTTTT
TCACTGTTTGTGGCTTCAACTGTTTCTTGATTGATGGAATCTAGTTCCAT
ATGGACTAGTGTCTCAGGATGGGGTGCAGTAGAGAAGTACGTCATTGAGA
TACGGGAGATGAGGCCGATTGTTTTCTCGCCCAGCAAGAAGAGGTAGAAG
CCGTTCTTCCCAGTGCTCTCAAAGCATTGATATTGACACAAGTGGACCCC
GAGCGTTCTCGTGAGTAGGTGGGACGTTCTCGGGAGTAGGGGGAAGTATT
GCAGTGGGAAGTACGGCTCTTGTGTCATGCCAGTGCTACGCGTCTCCTAG
CAACTATGTTAGTAACCAAATTATTCAATTCCTCGCAATCATTAAAGGCA
GAATATAGTACGGCAGTCATCTCACTTGAAATAACCGCATATTTTAGCGG
TCAGCGGTTGCTACGTGCGATGCGCCGGCAGGAGACTTACGTCGCTGTCG
CGTCAGGAATGAAAGAGGCTAAGCTAACCATCTCTTATCGCCCCCGGTGC
CACATTGTCCACCATGGATGCCGCAGCAAGCACGTAAAGCCTTGTTCAAC
AAAGGAGTTCAACAGATGGCACACTCTATTGCCGGCCCGCTACGTTAATT
GTTGTTGGCCGACTTGATCCGCGTTGCTCTGCCCATGCACACCTGCGTCT
TTGATTGCCCCTAACCTCGTCGTTTCCCATGATCTTACACCTTACACCTG
CGCTTGCGCCTCCGTCCCTCCGTGCACTGCAGCTGCACCATGGCGACAAG
AGGCGTCCCGACGTTTACTGCTTCGTTTTGTTTTAAGGAGCGAGCGAGTT
AGTGAGTGGGAATTTCCTGCATAGAAAGAGGGGCACCCAGCTGGCGATCG
TGTCGCGCCTAGATTTACTGCATGATAAATCGCGATGGAGAATGGATGGT
GATGGCTTGGCGAATGGATTTGGCGAACTGCTGCAACGTGAATTAGACGG
ATGCGCCCACTTTCTTGCACACTGCGAAAAGAGTCAGCATTGGTTGATTT
CAATATCTCCTGGCATGAAAGAACTACCAGTTTTTGCCGAATGTAGCCGT
GGTTCCATGGCGAAGGCGTTCAGCTTTATGAATACCGTCTTGGTGTTGGA
AGAAAGTAGGAGGAGCTGACCAACAGGAAATGGGACACTTGGTGCTGTTT
TGTTGTGTTCTATCGTGCTTTGTTGTGCTGTGTTGTGCCATGTGGCCCTT
CTGTCCCGAGTGCATTCGAAGGTGCCGGTGGAATAGAACAAATTGGAAAA
ATGATGCACGTGTCACCTGGTGTTTTACAATTTCAGCTTTTCGGTTGACA
AAGGCAAGCAGCAAAAATGGGCTGATTGCGGCGTACATGCCCTCAGCGAT
TTGTGCACGTACTTTCAGTTTGTGGCTGCCCGGATTTTTGCTATGTAAAA
CTAGGAAACGTTAGAGGGTGACCGGGTAAAGTGTTGAATTTCTCGTGGCG
ATCTAAATAAAGCAGTGAACATCATGCAATACGTCTTGCAAGGGAAAGAG
GCATCGGCTTGCAGCGGGTATCTGCCGTTCGGAGGTAGTATGGCCGATGG
CCGACGTCTGCCGCAGATAACGGATGGATGAAACGGTGCAATACCAGGTA
TAAATTGGGAACAAGGTTGCTGTGATGCAAACACTTTCGATGTCTCTGAT
GTCTTTGTGCCGGGGGGCTGGTTCGCGATGACCGAATGATTGGGAATAGT
ACGTTAGTGGGTAGGATAGCTTGCGCAGGTGTCACTTCTCTGCTGCTGCT
ATTTTTCATGCTTCCGCATGGTGCGCTATTAAAAGCGACATGCTTGTCCC
TTCTACATTTGGACCACCACTCTCAGCAACGGATGGAATATGATGTGGCG
TGATGTGATGGACGGATGGCCTCCGCGACCTATTCGTCTAAACGCGAAAC
TCGAAAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig154:41615..47974-

>mRNA_H-canaliculatus_F_contig154.3994.1 ID=mRNA_H-canaliculatus_F_contig154.3994.1|Name=mRNA_H-canaliculatus_F_contig154.3994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:41615..47974- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCACGGCGGGGAAGTAGTGCGGGCGGGGGCTCATCGGCAGCAGGCGC
AGCGGTGGATAGCGCTGGTTCGCGTTCGCGGGGGTCCTCAGCAGAAGGTA
CATGTAGACATAGCACGTCGGAGGCGCAAGCTGCCATGGAGGCTCAAATT
GTCGGTCCATTCCACAAATGTGGCGGGTGCAAGCTGCGGATGGTCAACGT
AACGGCTACCGCTGACATGAGGTGTTCCATCGACTTGAAGACAGTCGTTA
TGAGGGCGCGCAACGCCGAGTACAACCCGAAGCGCTTCTCTGCCTGTATG
CCACGGCGGGGAAGTAGTGCGGGCGGGGGCTCATCGGCAGCAGGCGCAGC
GGTGGATAGCGCTGGTTCGCGTTCGCGGGGGTCCTCAGCAGAAGGTACAT
GTAGACATAGCACGTCGGAGGCGCAAGCTGCCATGGAGGCTCAAATTGTC
GGTCCATTCCACAAATGTGGCGGGTGCAAGCTGCGGATGGTCAACGTAAC
GGCTACCGCTGACATGAGGTGTTCCATCGACTTGAAGACAGTCGTTATGA
GGGCGCGCAACGCCGAGTACAACCCGAAGCGCTTCTCTGCCTGTATCATC
CGGCTCATCAACAAGAATGAACCCAAGGCCACCGCACTGGTGTTCAAGAC
GGGTAAAGTGGTTGTGACCGGGTCGAGGAGCAACGCCTCCGTGGACTATG
CTTGCAAAACGTTCGCTCGTATCCTCAGCAAGCTCGACGGCGGTAGCAGC
GGGCCATCAAACAAAATAAACTTCGAATCATCCGGCTCATCAACAAGAAT
GAACCCAAGGCCACCGCACTGGTGTTCAAGACGGGTAAAGTGGTTGTGAC
CGGGTCGAGGAGCAACGCCTCCGTGGACTATGCTTGCAAAACGTTCGCTC
GTATCCTCAGCAAGCTCGACGGCGGTAGCAGCGGGCCATCAAACAAAATA
AACTTCGACCTCGAAAGAGATCGCAAGGTCCAGAACATGGTGGCCACGAC
GGACCTAGGGTTTCCCATACGCCTGGAAGGCTTGGTAGCCTCGAAGTTTG
GGAGCTTCTGCAACTACGAGCCCGAGCTGTTTCCGGGTCTGATTTACCGT
CTGACCAAGCCCAAGATTTGCTTTCTCGTGTTCGTGTCAGGAAAGGTGAG
CGCAGATTATCGTAACCACCGTCCAACCAAACGCGAAAGCGAAGCCGCTT
TTTTCCCAAGGGTGACATGTTATTATATTAAGCGAATATGCCATTATGTT
AATACCTACTGCTTCGTGCCACGCTTCGCGCTGCAGTTCGCACGGGGGAT
GTGGTGTAAGAGTGCGAGAACCACCCGCGTGGGCACTCACGTGGTGAATG
TGCTATGACCTCGAAAGAGATCGCAAGGTCCAGAACATGGTGGCCACGAC
GGACCTAGGGTTTCCCATACGCCTGGAAGGCTTGGTAGCCTCGAAGTTTG
GGAGCTTCTGCAACTACGAGCCCGAGCTGTTTCCGGGTCTGATTTACCGT
CTGACCAAGCCCAAGATTTGCTTTCTCGTGTTCGTGTCAGGAAAGGTGAG
CGCAGATTATCGTAACCACCGTCCAACCAAACGCGAAAGCGAAGCCGCTT
TTTTCCCAAGGGTGACATGTTATTATATTAAGCGAATATGCCATTATGTT
AATACCTACTGCTTCGTGCCACGCTTCGCGCTGCAGTTCGCACGGGGGAT
GTGGTGTAAGAGTGCGAGAACCACCCGCGTGGGCACTCACGTGGTGAATG
TGCTATGA
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