mRNA_H-canaliculatus_F_contig15389.3982.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15389.3982.1
Unique NamemRNA_H-canaliculatus_F_contig15389.3982.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15389.3982.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-7
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = -1 
Query:    1 LPRKRRQDGGGTGLTVESAMETVQKGVRHYTTE 99
            L R+R +DGGGTGLT ESAMETV+KGVRHYTTE
Sbjct:  968 LARQREEDGGGTGLTAESAMETVKKGVRHYTTE 1000
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BLAST of mRNA_H-canaliculatus_F_contig15389.3982.1 vs. uniprot
Match: D8LKU0_ECTSI (Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.570e-6
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = -1 
Query:    1 LPRKRRQDGGGTGLTVESAMETVQKGVRHYTTE 99
            L R+R +D GGTGLT ESAMETV+KGVRHYTTE
Sbjct:  555 LARQREEDEGGTGLTAESAMETVKKGVRHYTTE 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15389.3982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5B7_9PHAE1.440e-781.82Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
D8LKU0_ECTSI1.570e-678.79Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15389contigH-canaliculatus_F_contig15389:893..1365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.9792259-CDS-H-canaliculatus_F_contig15389:892..13631622929274.9792259-CDS-H-canaliculatus_F_contig15389:892..1363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15389 893..1363 +
1696845746.3607075-CDS-H-canaliculatus_F_contig15389:892..13631696845746.3607075-CDS-H-canaliculatus_F_contig15389:892..1363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15389 893..1363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15389.3982.1prot_H-canaliculatus_F_contig15389.3982.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15389 893..1363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15389.3982.1

>prot_H-canaliculatus_F_contig15389.3982.1 ID=prot_H-canaliculatus_F_contig15389.3982.1|Name=mRNA_H-canaliculatus_F_contig15389.3982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
LGGVVAHPLLYRLHRALDGEASPAAVLPPFAGQREGGMGRGTQGQVRPWS
GVRALGSNPPRSSSSSSLSWATTSPPEDYKKKKKSEEERRALGRGGGAGG
RGPQEKAGTRPCRTADRHGPEQLKQSEFTSSRWRARPWKCASKRGRSPAH
PVAASAG
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mRNA from alignment at H-canaliculatus_F_contig15389:893..1365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15389.3982.1 ID=mRNA_H-canaliculatus_F_contig15389.3982.1|Name=mRNA_H-canaliculatus_F_contig15389.3982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=473bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15389:893..1365+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGGTGGTGTAGTGGCGCACCCCCTTCTGTACCGTCTCCATCGCGCTCT
CGACGGTGAGGCCAGTCCCGCCGCCGTCCTGCCGCCGTTTGCGGGGCAGA
GGGAGGGAGGGATGGGGCGAGGGACGCAGGGGCAAGTGCGTCCGTGGTCG
GGCGTGCGGGCCTTGGGTTCGAACCCACCACGATCGTCGTCGTCGTCGTC
GTTGTCGTGGGCGACAACATCTCCGCCGGAGGACTACAAAAAAAAAAAGA
AATCAGAGGAAGAGCGCAGAGCCCTGGGTCGTGGCGGGGGGGCTGGGGGG
CGAGGCCCGCAAGAAAAGGCGGGAACGCGACCGTGTCGCACCGCTGACCG
ACACGGACCGGAGCAGCTAAAACAGTCAGAGTTCACCTCTTCGCGCTGGC
GTGCCAGGCCCTGGAAGTGCGCGAGCAAGCGCGGGAGGTCTCCCGCCCAC
CCGGTCGCGGCGAGCGCCGGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15389:893..1365+

>mRNA_H-canaliculatus_F_contig15389.3982.1 ID=mRNA_H-canaliculatus_F_contig15389.3982.1|Name=mRNA_H-canaliculatus_F_contig15389.3982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15389:893..1365+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGGTGGTGTAGTGGCGCACCCCCTTCTGTACCGTCTCCATCGCGCTCT
CGACGGTGAGGCCAGTCCCGCCGCCGTCCTGCCGCCGTTTGCGGGGCAGA
GGGAGGGAGGGATGGGGCGAGGGACGCAGGGGCAAGTGCGTCCGTGGTCG
GGCGTGCGGGCCTTGGGTTCGAACCCACCACGATCGTCGTCGTCGTCGTC
GTTGTCGTGGGCGACAACATCTCCGCCGGAGGACTACAAAAAAAAAAAGA
AATCAGAGGAAGAGCGCAGAGCCCTGGGTCGTGGCGGGGGGGCTGGGGGG
CGAGGCCCGCAAGAAAAGGCGGGAACGCGACCGTGTCGCACCGCTGACCG
ACACGGACCGGAGCAGCTAAAACAGTCAGAGTTCACCTCTTCGCGCTGGC
GTGCCAGGCCCTGGAAGTGCGCGAGCAAGCGCGGGAGGTCTCCCGCCCAC
CCGGTCGCGGCGAGCGCCGGGCTCGGTGGTGTAGTGGCGCACCCCCTTCT
GTACCGTCTCCATCGCGCTCTCGACGGTGAGGCCAGTCCCGCCGCCGTCC
TGCCGCCGTTTGCGGGGCAGAGGGAGGGAGGGATGGGGCGAGGGACGCAG
GGGCAAGTGCGTCCGTGGTCGGGCGTGCGGGCCTTGGGTTCGAACCCACC
ACGATCGTCGTCGTCGTCGTCGTTGTCGTGGGCGACAACATCTCCGCCGG
AGGACTACAAAAAAAAAAAGAAATCAGAGGAAGAGCGCAGAGCCCTGGGT
CGTGGCGGGGGGGCTGGGGGGCGAGGCCCGCAAGAAAAGGCGGGAACGCG
ACCGTGTCGCACCGCTGACCGACACGGACCGGAGCAGCTAAAACAGTCAG
AGTTCACCTCTTCGCGCTGGCGTGCCAGGCCCTGGAAGTGCGCGAGCAAG
CGCGGGAGGTCTCCCGCCCACCCGGTCGCGGCGAGCGCCGGG
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