mRNA_H-canaliculatus_F_contig15367.3973.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15367.3973.1
Unique NamemRNA_H-canaliculatus_F_contig15367.3973.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15367.3973.1 vs. uniprot
Match: A0A6H5K0W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.450e-6
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 SSRAAADAERRSQSLQRRAEQEKDKAESAQSSTVRXXXXRAEGERALGLFQGSMERALRDVEDSLVDALQGVGT-ERFGAAAVDEGGWAG 267
            S+RAAA+AERRS +L+                  R    R E ERALG FQGSM RAL+DVED+L DALQG+G  E F     D  G  G
Sbjct:  333 SARAAAEAERRSDALKXXXXXXXXXXXXXXXLXXRAEAARDERERALGEFQGSMTRALQDVEDALADALQGIGGWEPFHQGGEDFAGGGG 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15367.3973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0W7_9PHAE8.450e-647.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15367contigH-canaliculatus_F_contig15367:774..2184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.7890263-CDS-H-canaliculatus_F_contig15367:773..10761622929273.7890263-CDS-H-canaliculatus_F_contig15367:773..1076Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15367 774..1076 -
1696845745.7675757-CDS-H-canaliculatus_F_contig15367:773..10761696845745.7675757-CDS-H-canaliculatus_F_contig15367:773..1076Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15367 774..1076 -
1622929273.805026-CDS-H-canaliculatus_F_contig15367:2031..21841622929273.805026-CDS-H-canaliculatus_F_contig15367:2031..2184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15367 2032..2184 -
1696845745.7784657-CDS-H-canaliculatus_F_contig15367:2031..21841696845745.7784657-CDS-H-canaliculatus_F_contig15367:2031..2184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15367 2032..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15367.3973.1prot_H-canaliculatus_F_contig15367.3973.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15367 774..2184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15367.3973.1

>prot_H-canaliculatus_F_contig15367.3973.1 ID=prot_H-canaliculatus_F_contig15367.3973.1|Name=mRNA_H-canaliculatus_F_contig15367.3973.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
SSRAAADAERRSQSLQRRAEQEKDKAESAQSSTVRAEAARAEGERALGLF
QGSMERALRDVEDSLVDALQGVGTERFGAAAVDEGGWAGPPGTTEPPPPP
LPPVAAAAAAAAAAAAVPEAAVPEASRGRGAPRLCLSSDGRSRGGGSGGG
GD
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mRNA from alignment at H-canaliculatus_F_contig15367:774..2184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15367.3973.1 ID=mRNA_H-canaliculatus_F_contig15367.3973.1|Name=mRNA_H-canaliculatus_F_contig15367.3973.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1411bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15367:774..2184- (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGAGAGCCGCGGCCGATGCGGAGCGTCGGTCGCAGTCGCTTCAGCG
CCGAGCTGAGCAAGAGAAAGACAAGGCGGAGTCCGCGCAATCGTCGACGG
TTCGAGCCGAGGCGGCACGTGCGGAGGGGGAGCGTGCGCTGGGCTTGTTC
CAGGTGCGCGTGGGGGACCCGCGTATCGGACGATGGAGCTCCTCCGACTC
GCCTCCTTAGCGCTTTTGGTGTGCGGTGTGGTTTCGAAGCCTCGAGGTTG
ATCCAAGGCCGTACCACGTCGTGGTGGATGATGAGGCTCGAGTCAAACAT
CGTCCACCTCGTGGGGAGATGTTGTGAGAGGTGGCGGTACCGGTGGAAGA
ACCGTGTTGGCCGTATTTTTGGGGGGGTTGGGAGGAGAGCGGTGACGCTG
GAGAACGAACTCCGGGAATACGGCGATGCTGGCGTCAAGCGATACTTCCC
CGTCTGCAGGAGAGCACGAAATGCGACGGTGCTGTCTGGGTAGTCCAGCC
GTGTACCCCGAAAAAAACCGTGCTTCTGCTCAGGCAGACTCCCGCCGGGC
ACCTGTTGACGGGACGCCTAGGCCTCCGGCAAAACGAAAAGGCGTCCGAC
GGGGTATTGATGCGTCTGTTGACGGAACGAGTCACGTGCTGCAGCGATTG
ATAGCTACGGTCGACGCGTCTCCGGGTTTCGATTCCTTCCGGCCCAGTCG
AACAAGATCTCGAGGGGCACGTCTCACGTGGCCCGCAGTGTGCCGGTTTT
GTTGTTAGCGAGCGTTTCCCCTGAGCACCGAAGGACGTCGCTGATCAATT
CCCATCACCGTTGTTAGGCGACGAGGTCCCCATCGTTCCGTACGTCCCTA
CCGTTCCCTACACAGGCTGAAGTGAGCAAGTAGCACCTCCCCACCCCCCA
AACCTTCCTGCCGGTAGTGCCTGTCCGCGATGCCTCTCGTAGGCTCCAAG
AAAGACAAAGCCGCCGAAGGCATCGAACCACCCAGTGAAGGAAAGCTCTG
GAGACGAGCGTCTGGTGTACGACGCCAACACCAGATGCCTCTCTTCCACA
ACACACAGCACCGCTTCTGCACCCGCGATCCCCGCGATCAATCGACGTAT
GTCTCCAGGGATCGATGGAGCGCGCGCTCCGTGACGTCGAAGACTCCCTG
GTGGATGCCCTCCAAGGCGTCGGGACGGAACGTTTCGGCGCCGCCGCCGT
CGACGAGGGGGGCTGGGCAGGACCACCGGGTACGACGGAACCACCCCCTC
CACCACTACCACCCGTAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCCGCA
GCCGTGCCGGAGGCAGCCGTGCCGGAGGCATCGCGCGGCAGGGGCGCACC
TAGGCTCTGCCTTTCGTCGGACGGCCGATCTCGCGGTGGTGGCAGTGGTG
GTGGCGGCGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15367:774..2184-

>mRNA_H-canaliculatus_F_contig15367.3973.1 ID=mRNA_H-canaliculatus_F_contig15367.3973.1|Name=mRNA_H-canaliculatus_F_contig15367.3973.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15367:774..2184- (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGAGAGCCGCGGCCGATGCGGAGCGTCGGTCGCAGTCGCTTCAGCG
CCGAGCTGAGCAAGAGAAAGACAAGGCGGAGTCCGCGCAATCGTCGACGG
TTCGAGCCGAGGCGGCACGTGCGGAGGGGGAGCGTGCGCTGGGCTTGTTC
CAGTCGTCGAGAGCCGCGGCCGATGCGGAGCGTCGGTCGCAGTCGCTTCA
GCGCCGAGCTGAGCAAGAGAAAGACAAGGCGGAGTCCGCGCAATCGTCGA
CGGTTCGAGCCGAGGCGGCACGTGCGGAGGGGGAGCGTGCGCTGGGCTTG
TTCCAGGGATCGATGGAGCGCGCGCTCCGTGACGTCGAAGACTCCCTGGT
GGATGCCCTCCAAGGCGTCGGGACGGAACGTTTCGGCGCCGCCGCCGTCG
ACGAGGGGGGCTGGGCAGGACCACCGGGTACGACGGAACCACCCCCTCCA
CCACTACCACCCGTAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCCGCAGC
CGTGCCGGAGGCAGCCGTGCCGGAGGCATCGCGCGGCAGGGGCGCACCTA
GGCTCTGCCTTTCGTCGGACGGCCGATCTCGCGGTGGTGGCAGTGGTGGT
GGCGGCGATGGATCGATGGAGCGCGCGCTCCGTGACGTCGAAGACTCCCT
GGTGGATGCCCTCCAAGGCGTCGGGACGGAACGTTTCGGCGCCGCCGCCG
TCGACGAGGGGGGCTGGGCAGGACCACCGGGTACGACGGAACCACCCCCT
CCACCACTACCACCCGTAGCGGCGGCAGCAGCGGCAGCAGCAGCGGCCGC
AGCCGTGCCGGAGGCAGCCGTGCCGGAGGCATCGCGCGGCAGGGGCGCAC
CTAGGCTCTGCCTTTCGTCGGACGGCCGATCTCGCGGTGGTGGCAGTGGT
GGTGGCGGCGAT
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