mRNA_H-canaliculatus_F_contig1534.3960.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: D7FNN9_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN9_ECTSI) HSP 1 Score: 502 bits (1293), Expect = 1.050e-163 Identity = 356/633 (56.24%), Postives = 393/633 (62.09%), Query Frame = 1
Query: 1 ELDPKQEKLLEQGECDAGEVAMFVVGKVLADDTAMLYHLYAALLAEFRSRHRLCDSSHR----------------SSPNPIRRRSSDTDMVALFPRSCGRRSAAXXXXXXXXXXXXGATTTDQEGGFFASTPGLEKTYSFVEEAEMVAGEGSDTPSFDE-------------EGEGNVGGSVEGSGGRRH--------------------------DRRLSVARASE---------------------------CTSCGGRVTSGASQSG------KFTKALARDVDEXXXXXXGGLGDGWAAAEAPPCWCRDEAGFSASPEDERNSLLAVAAAG-RNGGTSRNGDAAEPPPDMNGGVIPEEALSGAGRHRGRGGDADQPHNGRS-TAGIETTARKDSDEKPLERGMGEDTRDALRDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLARRTRREERLRAADGRPSLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERISDALP-DQRTTDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLNDPDMSDDVFLDTPPP 1626
EL P+QEKLLEQGEC+AGE+AMFVVGKVLAD+TAML+HL+AALLAEFRSRH DSS + P PIRRRSSDTDMVALFPRS XXXXXXXXXXXX FFASTPGLEKT+SFVEEAE+VAGEGSDTP D+ E G+ G + R H RR SV A+ C +CGGRV S +G + T+AL DV+E GGLGDGWAAAEAP CWCRDE G SASPED S+LA A R G AA D G P++ SGAG R D+P NG AG T ALRDVHGVLRELT+AVL WCP LT+SHEAQIQAVNCIDQRVFS+TYG VF RIA+SGAAR+GD LARR +REER RAA GRP LLS CR EVVSALRAAGSARTGRDKLGFLV+A ER+SDALP +QRTTDALIFSVCRHLAA XXXXXXXX + AL RPHAEVAFVEQFMRDESW+MGKEGYVLTTVIAALHVLN+P++SDD+FLD PP
Sbjct: 425 ELAPEQEKLLEQGECNAGEMAMFVVGKVLADETAMLFHLHAALLAEFRSRH---DSSRSGXXXXXXXXXXXXXXXTRPVPIRRRSSDTDMVALFPRSXXXXXXXXXXXXXXXXXXXXXXXXX----FFASTPGLEKTFSFVEEAEIVAGEGSDTPGSDDXXXXXXXXXXXXXERSGDRRGRRLPTATRAHRWSKPVRSEAAGLASAPATAAVAVTAGRRSSVGAAASAAAVASRDSWRSNSSRMDSWVQLEGGVCGNCGGRVAGRHSANGGGGSGSRSTRALVGDVEEDE----GGLGDGWAAAEAPVCWCRDEGGLSASPEDAPISVLANAPPPPRQNAVGDGGVAATTGADS--GTKPDKTESGAGADRNG---LDRPQNGCCPAAGAGATXXXXXXXXXXXXXXXXXXXXALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYGPVFGRIASSGAARDGDASLARRVQREERSRAAAGRPPLLSACRPEVVSALRAAGSARTGRDKLGFLVRAAERVSDALPAEQRTTDALIFSVCRHLAAXXXXXXXXXXXXXXXXAQAAALPRPHAEVAFVEQFMRDESWVMGKEGYVLTTVIAALHVLNNPELSDDIFLDASPP 1041
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A6U1A6V6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1A6V6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.370e-12 Identity = 75/253 (29.64%), Postives = 109/253 (43.08%), Query Frame = 1
Query: 868 QPHNGRSTAGIETTARKD---SDEKPLERGMGEDTRDALRDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLARRTRREERLRAADGRP-----------SLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERISDALPDQRTTDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLND 1584
+P G S A + R D S E E + D G+ EL AVL + L+ E+ I +N +D+ V + Y ++F + G R D L + R +DG S S + L A ART DK+ LV+AVE + A P T D L+ ++ R +A + +P+LA H+EVAF ++ RD+ +GKEG+ LT+V AAL VL D
Sbjct: 405 EPDTGTSLASASSPPRLDCGGSREHSSSAAGLEPVASPILDAMGLAHELIAAVLHYHERLSQRDESIIATINAVDRVVLGEIYPTLFSDV--QGRFRSADTALREKLDHASAERVSDGGSGAEGSASGWDMSEFSQAQVTAAGTLAAVAKARTTLDKMRCLVRAVECTAAACPHAPTADDLVPALARTVALSMLL--------------EPSLAM-HSEVAFTDELCRDDLLCLGKEGFALTSVTAALSVLAD 640
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A7S0XQ13_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XQ13_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.600e-10 Identity = 73/254 (28.74%), Postives = 117/254 (46.06%), Query Frame = 1
Query: 883 RSTAGIETTARKDSDEKPLERGMGEDTRDALRDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVL--LA----RRTRREERLRAADGRPSLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERISDALPDQRT-----TDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLN-DPDMSDDVF 1608
RST G TT+ ++ E +E T RD H V++ +T ++L P S + ++ VF + Y V E I A++ +L +A ++ +RE+ + DG S +S E + L A SA DKL + V +E+ISD + D+L+ VC+H+ A +G ++++AF+E+F RDE + G+EGY L T+ A+LH LN D D+F
Sbjct: 40 RST-GNSTTSGTNNYEDQIEDERFARTYQRRRDAHAVIKYVTTSLLLTRPGFGHSSSLTEKTATAVESLVFGEIYDLVMEEIELEHEAKDNLLLDKIADFDKKQNQREDPID--DGYKSFISEAALEALHCLPQAHSAV---DKLRYCVVFLEQISDKFSKSKVKSAMGADSLLKMVCQHVLVAKV-MGI------------------NSQIAFLEEFARDEQLLRGREGYALVTLQASLHFLNASEDFETDIF 268
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A7S2M9W4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9W4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.800e-10 Identity = 62/220 (28.18%), Postives = 106/220 (48.18%), Query Frame = 1
Query: 952 GEDTRDALR----DVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLARRTRRE-ERLRAADGRPSLLSTCRAE-VVSALRAAGSARTGRDKLGFLVQAVERISD---ALPDQRTTDA--LIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVL 1578
GED +A R + H +++ +T +LE P+L++S + + ++ VF + Y ++E +E D+ L+ + R + ++ + S+ ++ ++ALRA T +KL V +E IS+ L + DA L+ VC+H+ A+ + HAEVAF+E+F RDE + GKEGY L T+ A+LH L
Sbjct: 6 GEDDVNASRICRTNAHNIIKHVTATLLEVRPVLSSSSVMTELSADAVELLVFGELYSDIYEEFVQQ--TKEQDLNLSNKVRELCDHVKDGGVESGVESSAISQPAIAALRALPQVHTPAEKLNHCVGFLESISEHFSTLYQGKCIDADTLLVMVCQHVVASN-------------------VDHLHAEVAFLEEFARDEQLLSGKEGYALITLQASLHYL 204
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: B7FUU1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUU1_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 4.550e-8 Identity = 64/221 (28.96%), Postives = 98/221 (44.34%), Query Frame = 1
Query: 961 TRDALRDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLARRTRREERLRAADGRPSLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERISDALPDQRT---TDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLNDPDMSDDVFLD 1614
TR D H V++ +T +LE P S ++ VF + Y SVF IA E D L R E + + L+S + ++AL A + DKL + V+ +E +S + D+L+ C+H+ AA L + +AEVAF+E+F RDE + G+EGY L T+ A++H LN +S D + D
Sbjct: 538 TRSRRDDAHAVIKHVTATLLEVRPGFGHSRAITELTAAAVESLVFGKLYDSVFGEIAFE--TEEIDTKLLDRVAEFEASEHSINK-ELVSE---QALAALCTLPEAHSAVDKLHYGVKFLELLSSHFSESGNPICADSLLKMACQHILAAK-------------------LPQMNAEVAFLEEFARDEQLLKGREGYALVTLQASMHFLN---LSQDFYRD 730
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A7S4EG19_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG19_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.820e-8 Identity = 65/228 (28.51%), Postives = 103/228 (45.18%), Query Frame = 1
Query: 976 RDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLA-------RRTRREERLRAAD----GRPSLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERISDALPDQRTT-----DALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLNDP-DMSDDVF 1608
RD H V++ +T ++L P S + ++ VF + Y V E I + D+LL R+ + E+ L+ G S +S E + L A SA DKL + V +E+IS+ + TT D+L+ VC+H+ A +G ++++AF+E+F RDE + G+EGY L T+ A+LH LN D D+F
Sbjct: 816 RDTHAVIKYITTSLLLTRPGFGHSSSFTEKTATAVESLVFGEIYDLVTEEIELEYQ-NQDDLLLEKIANFERRQDQGEDSLKTPGNPCFGYKSYISEAALEALHCLPRAHSAV---DKLRYCVVFLEQISEKFSNTATTSVMGADSLLKMVCQHILLAKV-IGI------------------NSQIAFLEEFARDEQLLRGREGYALVTLQASLHFLNSSTDFESDIF 1020
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A7S3XRE5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRE5_HETAK) HSP 1 Score: 57.8 bits (138), Expect = 2.650e-5 Identity = 57/206 (27.67%), Postives = 89/206 (43.20%), Query Frame = 1
Query: 964 RDALRDVHGVLRELTRAVLEWCPLLTASHEAQIQAVNCIDQRVFSQTYGSVFERIAASGAAREGDVLLARRTRREERLRAADGRPSLLSTCRAEVVSALRAAGSARTGRDKLGFLVQAVERIS-DALPDQRTTDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVL 1578
+DA+ D HG+ REL + P L E I VN +D+ VF + Y +VF +I + D LL T + + P + A L+ RT DKL L+ A++ + PDQ S+ + + G Q +E+ F+E+F RD+S ++GK GY LTT AA++++
Sbjct: 164 KDAVGDAHGLTRELVATMFTTHPFLQECTETIIATVNAVDRLVFGEIYWTVFAQIRIQNHYQ--DDLLNACTVKALESPTSISLPGFNAGTEA-AAKILKCVSERRTAFDKLEVLLDAIQSTELSSRPDQFLDKNGGNSMSGGEPLSADMLLPAITKVILTSGIQHL----PSELKFMEEFSRDDSLLLGKYGYALTTFQAAVNII 362
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Match: A0A7S0FMN2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMN2_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.880e-5 Identity = 42/129 (32.56%), Postives = 60/129 (46.51%), Query Frame = 1
Query: 1249 VSALRAAGSARTGRDKLGFLVQAVERISDALPDQR------TTDALIFSVCRHLAAATTFVGXXXXXXXXRGGEQPALARPHAEVAFVEQFMRDESWIMGKEGYVLTTVIAALHVLN-DPDMSDDVFLD 1614
+ AL + A++ DKL V+ +E IS + D L+ VC H+ A + R +AE+AF+E+F RDE + GKEGY L T+ A+LH LN D D+F D
Sbjct: 39 LEALLSMSDAKSSVDKLENCVKFLEAISVHFDQAAGGGKAVSADYLLKMVCEHIIVAK-------------------VPRLNAELAFLEEFARDEQLLRGKEGYSLVTLQASLHFLNASKDFDADIFKD 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1534.3960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1534.3960.1 >prot_H-canaliculatus_F_contig1534.3960.1 ID=prot_H-canaliculatus_F_contig1534.3960.1|Name=mRNA_H-canaliculatus_F_contig1534.3960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=545bp ELDPKQEKLLEQGECDAGEVAMFVVGKVLADDTAMLYHLYAALLAEFRSRback to top mRNA from alignment at H-canaliculatus_F_contig1534:24206..25948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1534.3960.1 ID=mRNA_H-canaliculatus_F_contig1534.3960.1|Name=mRNA_H-canaliculatus_F_contig1534.3960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1743bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:24206..25948- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1534:24206..25948- >mRNA_H-canaliculatus_F_contig1534.3960.1 ID=mRNA_H-canaliculatus_F_contig1534.3960.1|Name=mRNA_H-canaliculatus_F_contig1534.3960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:24206..25948- (Hapterophycus canaliculatus Oshoro5f female)back to top |