mRNA_H-canaliculatus_F_contig15331.3954.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15331.3954.1
Unique NamemRNA_H-canaliculatus_F_contig15331.3954.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15331.3954.1 vs. uniprot
Match: A0A6H5J6Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.790e-24
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 VSPYVFHTHAPRVFSAISECLRGAQEASADVIVQLEASEMAKEHERHLRAEETARYVCRLRELQALMKGRLEREIEG 231
            VSPYVFHTHAPRVFS ISE LR AQ+ASA+V+ +LEASE A+E +R +RA E   YV RLRELQALMK R+EREIEG
Sbjct:   26 VSPYVFHTHAPRVFSEISEALRRAQDASAEVMARLEASETAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIEG 102
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15331.3954.1 vs. uniprot
Match: D8LHR3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.470e-23
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 VSPYVFHTHAPRVFSAISECLRGAQEASADVIVQLEASEMAKEHERHLRAEETARYVCRLRELQALMKGRLEREIE 228
            VSPYVFHTHAPRVFS ISE LR AQ+ASA+V+ +LEASE A+E +R +RA E   YV RLRELQALMK R+EREIE
Sbjct:   26 VSPYVFHTHAPRVFSEISEALRRAQDASAEVMTRLEASETAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIE 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15331.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6Q7_9PHAE2.790e-2472.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR3_ECTSI2.470e-2372.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15331contigH-canaliculatus_F_contig15331:922..2259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_002740.1
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.9228508-CDS-H-canaliculatus_F_contig15331:921..10471622929270.9228508-CDS-H-canaliculatus_F_contig15331:921..1047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15331 922..1047 +
1696845744.675445-CDS-H-canaliculatus_F_contig15331:921..10471696845744.675445-CDS-H-canaliculatus_F_contig15331:921..1047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15331 922..1047 +
1622929270.939741-CDS-H-canaliculatus_F_contig15331:2124..22591622929270.939741-CDS-H-canaliculatus_F_contig15331:2124..2259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15331 2125..2259 +
1696845744.6882012-CDS-H-canaliculatus_F_contig15331:2124..22591696845744.6882012-CDS-H-canaliculatus_F_contig15331:2124..2259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15331 2125..2259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15331.3954.1prot_H-canaliculatus_F_contig15331.3954.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15331 922..2259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15331.3954.1

>prot_H-canaliculatus_F_contig15331.3954.1 ID=prot_H-canaliculatus_F_contig15331.3954.1|Name=mRNA_H-canaliculatus_F_contig15331.3954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
VSPYVFHTHAPRVFSAISECLRGAQEASADVIVQLEASEMAKEHERHLRA
EETARYVCRLRELQALMKGRLEREIEGARARKTLKR*
back to top

mRNA from alignment at H-canaliculatus_F_contig15331:922..2259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15331.3954.1 ID=mRNA_H-canaliculatus_F_contig15331.3954.1|Name=mRNA_H-canaliculatus_F_contig15331.3954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15331:922..2259+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTCGCCGTATGTGTTTCACACGCACGCCCCGAGAGTCTTCTCGGCGAT
TTCCGAGTGCTTGAGGGGCGCTCAGGAGGCCAGCGCGGACGTCATTGTTC
AGCTGGAGGCTTCAGAAATGGCCAAGGTGGGTGTTTTCGGTGCTGGTGCT
GCTACTGCTGGTGCTGCTCGTGCTGCTGCCGCCGCTGTTAGTTGTTGACG
TTGCTGTCGACTGGATGTCAGAAAGAAAATCCCATCTGGTAAACGTTGAT
GTTGTTTTTGGCCGTGTGCGTACCACCAGACGAATGCATTCGGTCGAGAC
GACATTCCTGGCAATCGAAGGACGCAGGCTTCACGACAGACGCAATGAGA
TACCAGCACGAGCTGGATCGACGAAAACAACGGAACAAGATGAGGAGGCA
TACATGCACACAGACACGCGCCCGCACAACAAATGACAGCTCTGTGCACT
ACTCTTCTACTACTCCCATCTTCATTCGCCTCTTGGCATGCCCTGCCAAT
CTCTTGAGACCACGAGCTAAAACTTAGCAGTGATGCACCACGAGAACAAA
CAGGAAAACATCGACATGCGCTGCGCGCTGGCTGCCGCCGTCTGGCGCAG
GGGTTCTATTCTCCTTGGTAGCAGTGGGCCGTCGAGGGCGACGGCTGGCC
GAACTCGTGATGGCGGCCCGATGTCCTTTCCGGCTTCGGGAATCAGGGAA
AGTCTTGCCGTGCTGGCAGCAGCTGTCTAGTTCATGTATCGCCCACTTAG
GCTTGCTTGTGGGTGCGTTTCTCTTTCTCTCTCTTGCGGCGGACGAGGAG
AGGGAGGGGCCGGCCGCGTGATCGTCTCGAGGGGGAGAGAAAAGGGAGGC
GGGGTGGGGTGGGGTGGTGCTGGTGCTGGTGGAAAGAGGGCGGTAAGCGT
AGACCGTGGACGACTCCCTCTGTTTCGCCGGCCTTCGGAGACTCGCCACA
GGAGAGAGGTGGTCTCTGGCTCGTTTTTGCTCTCTGAGATTCCAGCAAGG
CGAGGCGAGACGGGCAGGCGCGCCCAAACGCAGCGCACCTTCGACAACAC
AAACATGACACAAATGAAGAAAATAGCACAAGGACGGATCGATCAGATTC
CCCGACCGCGGCAGCTCGGACCAGAAACGGCCGTCCCCCCTACGCGCACC
CCGAAATCGCGCGTGGCGTTGTCACCCTTTCCCGGCCGATTTTGGTCCCT
CAGGAGCACGAGCGTCACTTGCGCGCGGAGGAGACCGCACGGTACGTCTG
TAGGCTGAGGGAGCTGCAGGCGCTTATGAAGGGCAGGCTGGAGAGAGAAA
TCGAGGGCGCCAGAGCCAGGAAGACTCTCAAGCGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15331:922..2259+

>mRNA_H-canaliculatus_F_contig15331.3954.1 ID=mRNA_H-canaliculatus_F_contig15331.3954.1|Name=mRNA_H-canaliculatus_F_contig15331.3954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15331:922..2259+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTCGCCGTATGTGTTTCACACGCACGCCCCGAGAGTCTTCTCGGCGAT
TTCCGAGTGCTTGAGGGGCGCTCAGGAGGCCAGCGCGGACGTCATTGTTC
AGCTGGAGGCTTCAGAAATGGCCAAGGTCTCGCCGTATGTGTTTCACACG
CACGCCCCGAGAGTCTTCTCGGCGATTTCCGAGTGCTTGAGGGGCGCTCA
GGAGGCCAGCGCGGACGTCATTGTTCAGCTGGAGGCTTCAGAAATGGCCA
AGGAGCACGAGCGTCACTTGCGCGCGGAGGAGACCGCACGGTACGTCTGT
AGGCTGAGGGAGCTGCAGGCGCTTATGAAGGGCAGGCTGGAGAGAGAAAT
CGAGGGCGCCAGAGCCAGGAAGACTCTCAAGCGGTGAGAGCACGAGCGTC
ACTTGCGCGCGGAGGAGACCGCACGGTACGTCTGTAGGCTGAGGGAGCTG
CAGGCGCTTATGAAGGGCAGGCTGGAGAGAGAAATCGAGGGCGCCAGAGC
CAGGAAGACTCTCAAGCGGTGA
back to top