mRNA_H-canaliculatus_F_contig1529.3924.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1529.3924.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 475 bits (1223), Expect = 2.520e-157 Identity = 267/384 (69.53%), Postives = 300/384 (78.12%), Query Frame = 1
Query: 181 PGDKSRALLGFGLSKSTGGGTFSGSYQRVSSWNDDGGXXXX---------DEGVTARSLSINSDGGG------EIPRGLAAGGSDPPTAITHVMKSDRRSLGAAAEG--TTGVAAKRAFSWFLSFEDRQILKRRTILARISSLVLLTSFASDLDLITDWTFLHYGLAGQGIVIRKLALVFAIMGTIMWALSTTEFSLMSKLKTMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFVITIITRPTSVSGVLNLTASGLSLCAKIVKGVSSQRAPSLATQFMMIDQDPAVTRNLFKLRDEAKKKAKSAEQLVYLAWENRRVAGEEKAAAVFRVLQMDPTFVNGDLDYMRPDLFAGSRLYITSCSLTGSIPSELGSLTVLKTLVLCRN 1281
PGDKSRAL G GLS S GGGTFSGSYQR+ SW D XXXX D G RSLSINSDGGG A + T + +K RR+ G + G +G SWFLS +DRQ+LKRRTIL+RI+ +VLL+SF DLDLITDWTFL YGLAGQG +IRKLAL FAI+GT+MWALSTTEFSLMSKLK MWKGNPLSRLQHVGLGWQLLANVFLEDVPQF+IT+ITRPTSV+GVLNL ASGLSLCAKIV G SSQRAPSL+TQF MIDQDPAVTRNLFKLRDEAKKKAK+AE+LVYLAW NR GE+KAAAVF+VLQMDPTFV GDL+YMR DLF+GSRLYIT+ SLTG IPS++G +T+L+ +VL N
Sbjct: 26 PGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGDVPRSLSINSDGGGFGAGTXXXXXXXXAAATARSTELGPAIK--RRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_H-canaliculatus_F_contig1529.3924.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 331 bits (849), Expect = 8.780e-105 Identity = 206/339 (60.77%), Postives = 230/339 (67.85%), Query Frame = 1
Query: 85 IAGYVSDGAASDASDPGVFGASSTTAASFATTPGDKSRALLGFGLSKSTGGGTFSGSYQRVSSWNDDGGXXXX-------DEGVTARSLSINSDGGGEIPRGLAAGGSDPPTAITHVMKSDRRSLGAAAE-----------GTTGVAAKRAFSWFLSFEDRQILKRRTILARISSLVLLTSFASDLDLITDWTFLHYGLAGQG-----------IVIRKLALVFAIMGTIMWALSTTEFSLMSKLKTMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFVITIITRPTSVSGVLNLTASGLSLCAKIVKGVSSQRAPSLATQFMMIDQDPAVTRNLFKLR 1014
+AGY+SDGAASD S PG A++ GDKSRAL G GLS S GGGTFSGSYQR+ SW D XXXX D G RSLSINSDGGG AG + LG A + G +G SW+LS +DRQ+LKRRTIL+RI+ +VLL+SF DLDLITDW FL YGLAGQG +IRKLAL FAI+GT+MWALSTTEFSLMSKLK MWK LQHVGLGWQLLANVFLEDVPQF+IT+ITRPTSV+GVLNL ASGLSLCAKI+ G+SSQRAPSL+TQF MIDQDPAVTRNLFKLR
Sbjct: 55 VAGYISDGAASDVSAPGEPAAAAL---------GDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXDGGDVPRSLSINSDGGG-----FEAGTRXXXXXXXXXATARSTELGPAIKRRAPGKTSRGLGASGARGSGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_H-canaliculatus_F_contig1529.3924.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.180e-43 Identity = 107/256 (41.80%), Postives = 154/256 (60.16%), Query Frame = 1
Query: 511 RQILKRRTILARISSLVLLTSFASDLDLITDWTFLHYGLAGQGIVIRKLALVFAIMGTIMWALSTTEFSLMSKLKTMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFVITIITRPTSVSGVLNLTASGLSLCAKIVKGVSSQRAPSLATQFMMIDQDPAVTRNLFKLRDEAKKKAKSAEQLVYLA----WENRRVAGEEKA----AAVFRVLQMDPTFVNGDLDYMRPDLFAGSRLYITSCSLTGSIPSELGSL 1248
R+ LKR I +++ L +LTS SDLDL DW FL GL ++ +A V ++GT+M+ L T EF +S+ T W +G LS LQHV LGWQLL NV +ED+PQ VIT +T PTSV+GVLN+ +G +L AK+ +G +++ +++Q MID DP V ++L R +A++ A +A L L EN + E + A F+V+Q+DP F+NG+L Y+R L SRL + L GS+P LG +
Sbjct: 122 RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEV-SRLNLGRFGLKGSLPPSLGDV 375
BLAST of mRNA_H-canaliculatus_F_contig1529.3924.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.610e-15 Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1
Query: 1087 GEEKAAAVFRVLQMDPTFVNGDLDYMRPDLFAGSRLYITSCSLT 1218
GE+KAAAVF+VLQMDPTFV GDL+YMR DLF+GSRLYITSCSLT
Sbjct: 13 GEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1529.3924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1529.3924.1 >prot_H-canaliculatus_F_contig1529.3924.1 ID=prot_H-canaliculatus_F_contig1529.3924.1|Name=mRNA_H-canaliculatus_F_contig1529.3924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=638bp LPSSHFLRRRLTPLHAATPRPSTATRAIIAGYVSDGAASDASDPGVFGASback to top mRNA from alignment at H-canaliculatus_F_contig1529:7745..21878- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1529.3924.1 ID=mRNA_H-canaliculatus_F_contig1529.3924.1|Name=mRNA_H-canaliculatus_F_contig1529.3924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=14134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:7745..21878- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1529:7745..21878- >mRNA_H-canaliculatus_F_contig1529.3924.1 ID=mRNA_H-canaliculatus_F_contig1529.3924.1|Name=mRNA_H-canaliculatus_F_contig1529.3924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1529:7745..21878- (Hapterophycus canaliculatus Oshoro5f female)back to top |