mRNA_H-canaliculatus_F_contig1518.3869.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1518.3869.1
Unique NamemRNA_H-canaliculatus_F_contig1518.3869.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1518.3869.1 vs. uniprot
Match: A0A6H5JLT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.250e-25
Identity = 81/169 (47.93%), Postives = 106/169 (62.72%), Query Frame = 3 
Query:  456 LYESARQVIEGASVAAGTPDVEATGGPN---TTRRPKYS--LKDKLDRLVEEANHGGGTGKKKQQQATTAVRGNGDTVLAVRA-HGDIS--SENDGN-TGEERQEGGGRNDECLGLMAEAFADDLDLLRKDEHFRGSATNLAAMADMMRCLAGGLSSTEQKMLLENVSR 935
            LY++ARQ I  AS  AG    EA G        +RP+++  L  KL R VEE  +    G++   Q T  V+ +G +    R  H ++   +E+ G+ +G E      + DECLGLMAEAFADDLDLLRKDEHF GSA ++AAMADMMRC+AGGL S EQ+MLL+N +R
Sbjct:   10 LYDAARQAIRDAS--AGGAATEAAGRDQDAYVAKRPQHNDLLDKKLHRSVEEM-YQSTRGEQNSAQGTQDVQFSGISGNKKRQRHDEVEKPAEDAGDASGGEEGHATTQEDECLGLMAEAFADDLDLLRKDEHFGGSANDIAAMADMMRCIAGGLDSIEQRMLLDNAAR 175
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BLAST of mRNA_H-canaliculatus_F_contig1518.3869.1 vs. uniprot
Match: D8LNF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.070e-14
Identity = 67/164 (40.85%), Postives = 85/164 (51.83%), Query Frame = 3 
Query:  438 SSSHRVLYESARQVIEGASVAAGTPDVEATGGPN---TTRRPKYS--LKDKLDRLVEEANHGGGTGKKKQQQATTAVRGNGDTVLAV-----------RAHGDISSENDGNTGEERQEGGG--RNDECLGLMAEAFADDLDLLRKDEHFRGSATNLAAMADMMR 875
            S S   LY++AR+ I  AS  AG    EA G         RP++   L  KL R VEE  H        + Q  ++ +G  D  L+            R  G+ +   D     + +EG    + DECLGLMAEAFADDLDLLRKD+HF GSA ++AAMADMMR
Sbjct:    4 SRSRLCLYDAAREAIRDAS--AGGAAAEAVGRDQDACVATRPQHDDVLDKKLHRSVEEMYHS------TRGQQNSSTQGTPDVQLSASDSGVGNKKRQRHDGEEAPTEDAGDASDGEEGHPTTQEDECLGLMAEAFADDLDLLRKDDHFGGSANDIAAMADMMR 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1518.3869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLT0_9PHAE3.250e-2547.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNF4_ECTSI1.070e-1440.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1518contigH-canaliculatus_F_contig1518:18932..21824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004060.1
Exons2
Model size1662
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1518.3869.1prot_H-canaliculatus_F_contig1518.3869.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1518 19321..21100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.93329-UTR-H-canaliculatus_F_contig1518:18931..193201622929258.93329-UTR-H-canaliculatus_F_contig1518:18931..19320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 18932..19320 +
1696845739.7103326-UTR-H-canaliculatus_F_contig1518:18931..193201696845739.7103326-UTR-H-canaliculatus_F_contig1518:18931..19320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 18932..19320 +
1622929259.1931126-UTR-H-canaliculatus_F_contig1518:21100..218241622929259.1931126-UTR-H-canaliculatus_F_contig1518:21100..21824Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 21101..21824 +
1696845739.745526-UTR-H-canaliculatus_F_contig1518:21100..218241696845739.745526-UTR-H-canaliculatus_F_contig1518:21100..21824Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1518 21101..21824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.9480202-CDS-H-canaliculatus_F_contig1518:19320..198051622929258.9480202-CDS-H-canaliculatus_F_contig1518:19320..19805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 19321..19805 +
1696845739.7210631-CDS-H-canaliculatus_F_contig1518:19320..198051696845739.7210631-CDS-H-canaliculatus_F_contig1518:19320..19805Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 19321..19805 +
1622929258.9669755-CDS-H-canaliculatus_F_contig1518:21036..211001622929258.9669755-CDS-H-canaliculatus_F_contig1518:21036..21100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 21037..21100 +
1696845739.7323482-CDS-H-canaliculatus_F_contig1518:21036..211001696845739.7323482-CDS-H-canaliculatus_F_contig1518:21036..21100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1518 21037..21100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1518.3869.1

>prot_H-canaliculatus_F_contig1518.3869.1 ID=prot_H-canaliculatus_F_contig1518.3869.1|Name=mRNA_H-canaliculatus_F_contig1518.3869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=183bp
MGETAMTAASARMDSSSSSHRVLYESARQVIEGASVAAGTPDVEATGGPN
TTRRPKYSLKDKLDRLVEEANHGGGTGKKKQQQATTAVRGNGDTVLAVRA
HGDISSENDGNTGEERQEGGGRNDECLGLMAEAFADDLDLLRKDEHFRGS
ATNLAAMADMMRCLAGGLSSTEQKMLLENVSR*
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mRNA from alignment at H-canaliculatus_F_contig1518:18932..21824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1518.3869.1 ID=mRNA_H-canaliculatus_F_contig1518.3869.1|Name=mRNA_H-canaliculatus_F_contig1518.3869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:18932..21824+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTGATTATGTACCCAGACCGGAGACCGGCGCGGCAAGCACACAAGTGC
CGAGTGCCATCCTTGTTGCTGTCCTCGTCTTCACGCGATCTTGTTGTGAG
CTTTTGCTTACATCGGCTCACTCTTGGTCTCGTTCCTGTGGAGTTTTTCT
CCATCATTCTCACGTGAACACGACACAGAGCGCACGAATAGACGTCGTGG
AAGACTCACCAACACAGCAGCGCCTTGTTGTGCACTCTCCCGAGAGAGAA
GTCACGACCGACGGTATTTTCACAACAAAGAGAGCTCTCCTGTTTCGCCG
TTTGGCGCCGAGGTGGCCCCAAGATTGGTCTTGTGACTGCGGGACAGGAA
GTTGAACTGCAGACAAGACTATAACCTTGCGCGATCGAGATGGGAGAAAC
GGCGATGACTGCAGCGTCAGCGAGAATGGATTCTTCTTCGAGTTCACACC
GCGTCCTGTACGAGTCTGCGCGACAGGTAATTGAGGGCGCATCCGTAGCA
GCCGGCACACCGGATGTGGAAGCTACGGGCGGACCCAACACCACACGGCG
ACCAAAATACTCACTTAAGGACAAGCTAGATCGCCTAGTGGAAGAGGCAA
ACCATGGCGGTGGTACCGGGAAAAAAAAGCAACAGCAGGCAACCACAGCC
GTGAGGGGCAACGGAGATACGGTGCTAGCCGTCCGCGCGCATGGGGATAT
CAGCAGTGAAAATGATGGTAATACTGGAGAAGAGAGGCAGGAAGGAGGAG
GGCGAAACGACGAGTGTCTTGGCCTGATGGCGGAGGCGTTTGCTGATGAT
CTCGACCTTCTGCGCAAGGACGAACATTTCAGAGGCTCGGCGACAAACTT
GGCTGCAATGGCGGACATGATGAGGTGAGATGGCATAAATGGTGCGCTGT
GGGTTGTCCGGAAGGGAAGGTAGATGGGGAGAACCATATCACCATTGTCC
ACTCACGATCTCACGATCTTGTGGCCCCTTCAATTTGGAGACGATATTCA
GCCCATGAAACGGCGGGGCGTCTGTCTTTTTTCCTGCCGAACGTTCTTGT
ATTGAGAGAGATACACAAGTATGTATACAGAAACACGCAGGATTTACGAC
GTACCGTAAGAATCGGAGTCCTGGCACAGGTGTGCGGCAGGGTTTGCCGG
CCCGATATCTCGACGACAGGGAGGGCGCGGACACTGGCAAGACTCTCGGA
ACGGTCTTAGTACGTTGGCACCCTACCCCGTTGAAATATCGGGCTGGCGG
AATCCACCAGACCCCTCTGCCAAGACCCCGATTCCTGCGGTGGAATCCTC
GGTTTGCAAACACGCGCAATCTGGAGTGATCTCCACGATCGTTTCGCGAA
AAAACTGTTGCCATGAGTCTTCCCCTGCAGCGTATGGATGGAGATCGCGA
GGCCCTGAGACCAGTCCATGCTAGTCTACTGTCGATTGCAAGCCTCACGA
GCTCAACTCTAGATTCTATCACATTGCTATCTGTAATCCAGCCCAGCTAG
ATTATGCGTGTCATGCAACTTCTCTAGTACTCCACGAGTCTAACCTTCTT
GGAGCCACCACCTCCACTGACGCGAACTTGCTTTGGGCGAGTGGTCATGC
CGCACTTCCGCCTTCCTATTGGGAAAGTTGCCCCAATCGTGTTCGACATT
GGTCTCGTTTCACCCTCCTGATAAGAATATGTACGTGAACGAAGCGCTCA
GGAGCAGGTAGCCGCGCAGTCCGGCGGATTACGAGCGGGTTCTGTCAATC
ACATAACATGGCGTTGAAGCTCTGTACCTATTGATGATGAACCCGTGAAC
ATGATATTCGCCTCGAAAACGGTACGAAAGTGTAGACTCTGGGTACAGTC
TGCGAGTTTCCTTTTACGAAACAAGCTAGTAGGAGTTCTCTGGCATTGCA
CCAGCGTCGTCTCGCCATATGGTACTCCTCGCCTCTGCTCCGCAAGAACA
CTTCCCACCGCTCTCAGCCCCCCTTTTCGTTCGATCTTATGGATGCGCTG
TTGCGGATAGCCTTCCATAACTCCGCCCTGGATTGCCTCCAAATCCTCCG
ACGGCTTTCACCCGCGTATATCTCTGAACCGCTCGCCTTCCTTCCATTTG
TCTAGATGTCTAGCGGGCGGCCTGAGTAGCACGGAGCAGAAGATGCTCTT
GGAGAACGTATCCAGATGACGATGCGCGTCCGGATGCCATCTCTGGTCAT
TCTTCAAAAGCGCAAGGATTCATCGTTTGGCGTGGAAGAACACTTGAGGC
AGACGAAGGAGGAAGGGGCAGAGTCCGTTTGATACGCATCCTTCTTGTTG
CTGCTTCTTCCGAGAGGGAAAAACCAACACATTGGAAGAGCGCCAAAAAC
AGAGGACGTGGCGTTGCAACAGACCGGAGCCAGGAAAAAAGTCTTCAGGG
CAATGAGACGTTACCGTGTACCCGAACGAAGGGCGGGGTCTTGGACGCAT
CGCGGGCGCGAAAGGGGGTGCTAGGCTAGGCTCTGATGTTCGAAGTAAAC
TGTCAGCAGATTGTGATTTCATGATGAGCAAGATAGAGGCGTGAGGCTGC
GCGAATGATCTGTAGCGTGGTCGATACCGGCCGGGAACCATTGCTAGAGA
GGCCCCCCGATCCATAGCGGGATCACAATGCTGAACACGTGGCTGATTAC
TACGAGCGCGCTGCGGCAGCACACACATGAAGGACAAAACGATCTTTTGG
GCACGGGAGCCTATTTTGTTCACATGGATGCATCCCAAGACGGCGTCAAG
ATCCTAAGAGCTGTGGAGATGCGAAGTGGTTTCCCCGCACGCAGCCAATG
AAGGCCAACGCTTTCTCACATCCTGAATGCACACTCGACGTCCGGCAAGG
TGTCATAATCTTTTCGATGCTGTGATGACGCTGGTTCCAGTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1518:18932..21824+

>mRNA_H-canaliculatus_F_contig1518.3869.1 ID=mRNA_H-canaliculatus_F_contig1518.3869.1|Name=mRNA_H-canaliculatus_F_contig1518.3869.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1098bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1518:18932..21824+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGAAACGGCGATGACTGCAGCGTCAGCGAGAATGGATTCTTCTTC
GAGTTCACACCGCGTCCTGTACGAGTCTGCGCGACAGGTAATTGAGGGCG
CATCCGTAGCAGCCGGCACACCGGATGTGGAAGCTACGGGCGGACCCAAC
ACCACACGGCGACCAAAATACTCACTTAAGGACAAGCTAGATCGCCTAGT
GGAAGAGGCAAACCATGGCGGTGGTACCGGGAAAAAAAAGCAACAGCAGG
CAACCACAGCCGTGAGGGGCAACGGAGATACGGTGCTAGCCGTCCGCGCG
CATGGGGATATCAGCAGTGAAAATGATGGTAATACTGGAGAAGAGAGGCA
GGAAGGAGGAGGGCGAAACGACGAGTGTCTTGGCCTGATGGCGGAGGCGT
TTGCTGATGATCTCGACCTTCTGCGCAAGGACGAACATTTCAGAGGCTCG
GCGACAAACTTGGCTGCAATGGCGGACATGATGAGATGGGAGAAACGGCG
ATGACTGCAGCGTCAGCGAGAATGGATTCTTCTTCGAGTTCACACCGCGT
CCTGTACGAGTCTGCGCGACAGGTAATTGAGGGCGCATCCGTAGCAGCCG
GCACACCGGATGTGGAAGCTACGGGCGGACCCAACACCACACGGCGACCA
AAATACTCACTTAAGGACAAGCTAGATCGCCTAGTGGAAGAGGCAAACCA
TGGCGGTGGTACCGGGAAAAAAAAGCAACAGCAGGCAACCACAGCCGTGA
GGGGCAACGGAGATACGGTGCTAGCCGTCCGCGCGCATGGGGATATCAGC
AGTGAAAATGATGGTAATACTGGAGAAGAGAGGCAGGAAGGAGGAGGGCG
AAACGACGAGTGTCTTGGCCTGATGGCGGAGGCGTTTGCTGATGATCTCG
ACCTTCTGCGCAAGGACGAACATTTCAGAGGCTCGGCGACAAACTTGGCT
GCAATGGCGGACATGATGAGATGTCTAGCGGGCGGCCTGAGTAGCACGGA
GCAGAAGATGCTCTTGGAGAACGTATCCAGATGAATGTCTAGCGGGCGGC
CTGAGTAGCACGGAGCAGAAGATGCTCTTGGAGAACGTATCCAGATGA
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