mRNA_H-canaliculatus_F_contig15152.3855.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15152.3855.1
Unique NamemRNA_H-canaliculatus_F_contig15152.3855.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15152.3855.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.160e-26
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 GMVFLLPIYEQGINDSPGASRLSMANLKEGGETLWSGVVFAYIFTFYFLYSLRREFLA 174
            GMVFLLPIYEQGINDS GASRLSMANL+EGGETLWSGVVFAY+FT YFLYSLR+EF A
Sbjct:  161 GMVFLLPIYEQGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFFA 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15152.3855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV8_ECTSI7.160e-2689.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15152contigH-canaliculatus_F_contig15152:263..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog2880.D7FMV8
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size174
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.917114-UTR-H-canaliculatus_F_contig15152:262..2651622929256.917114-UTR-H-canaliculatus_F_contig15152:262..265Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15152 263..265 +
1696845739.1331995-UTR-H-canaliculatus_F_contig15152:262..2651696845739.1331995-UTR-H-canaliculatus_F_contig15152:262..265Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15152 263..265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.9395814-CDS-H-canaliculatus_F_contig15152:265..4391622929256.9395814-CDS-H-canaliculatus_F_contig15152:265..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15152 266..439 +
1696845739.1437025-CDS-H-canaliculatus_F_contig15152:265..4391696845739.1437025-CDS-H-canaliculatus_F_contig15152:265..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15152 266..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15152.3855.1prot_H-canaliculatus_F_contig15152.3855.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15152 266..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15152.3855.1

>prot_H-canaliculatus_F_contig15152.3855.1 ID=prot_H-canaliculatus_F_contig15152.3855.1|Name=mRNA_H-canaliculatus_F_contig15152.3855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
MVFLLPIYEQGINDSPGASRLSMANLKEGGETLWSGVVFAYIFTFYFLYS
LRREFLA*
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mRNA from alignment at H-canaliculatus_F_contig15152:263..439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15152.3855.1 ID=mRNA_H-canaliculatus_F_contig15152.3855.1|Name=mRNA_H-canaliculatus_F_contig15152.3855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15152:263..439+ (Hapterophycus canaliculatus Oshoro5f female)
GGCATGGTGTTCCTGCTCCCGATCTACGAGCAGGGCATCAACGACAGTCC
GGGGGCGTCCCGTCTGTCCATGGCCAACCTGAAGGAAGGCGGCGAGACCC
TGTGGTCTGGGGTCGTGTTCGCGTACATCTTCACCTTCTACTTCCTCTAC
AGTCTCCGGAGGGAGTTCCTGGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15152:263..439+

>mRNA_H-canaliculatus_F_contig15152.3855.1 ID=mRNA_H-canaliculatus_F_contig15152.3855.1|Name=mRNA_H-canaliculatus_F_contig15152.3855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15152:263..439+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGTTCCTGCTCCCGATCTACGAGCAGGGCATCAACGACAGTCCGGG
GGCGTCCCGTCTGTCCATGGCCAACCTGAAGGAAGGCGGCGAGACCCTGT
GGTCTGGGGTCGTGTTCGCGTACATCTTCACCTTCTACTTCCTCTACAGT
CTCCGGAGGGAGTTCCTGGCGTGAATGGTGTTCCTGCTCCCGATCTACGA
GCAGGGCATCAACGACAGTCCGGGGGCGTCCCGTCTGTCCATGGCCAACC
TGAAGGAAGGCGGCGAGACCCTGTGGTCTGGGGTCGTGTTCGCGTACATC
TTCACCTTCTACTTCCTCTACAGTCTCCGGAGGGAGTTCCTGGCGTGA
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