mRNA_H-canaliculatus_F_contig1513.3847.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1513.3847.1
Unique NamemRNA_H-canaliculatus_F_contig1513.3847.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1513.3847.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.110e-6
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = -1 
Query:  575 VGFVDFCDTESASIAKDRFKGQDVRGHSIGAEAS 676
            VGFVDF DTESA+IAK+RFKG   RGH IGAEA+
Sbjct:   49 VGFVDFLDTESATIAKERFKGHVFRGHPIGAEAT 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1513.3847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXN5_ECTSI5.110e-676.47RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1513contigH-canaliculatus_F_contig1513:74..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size621
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1466327-CDS-H-canaliculatus_F_contig1513:73..6941622929255.1466327-CDS-H-canaliculatus_F_contig1513:73..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1513 74..694 +
1696845738.1796079-CDS-H-canaliculatus_F_contig1513:73..6941696845738.1796079-CDS-H-canaliculatus_F_contig1513:73..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1513 74..694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1594455-UTR-H-canaliculatus_F_contig1513:694..7491622929255.1594455-UTR-H-canaliculatus_F_contig1513:694..749Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1513 695..749 +
1696845738.19005-UTR-H-canaliculatus_F_contig1513:694..7491696845738.19005-UTR-H-canaliculatus_F_contig1513:694..749Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1513 695..749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1513.3847.1prot_H-canaliculatus_F_contig1513.3847.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1513 74..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1513.3847.1

>prot_H-canaliculatus_F_contig1513.3847.1 ID=prot_H-canaliculatus_F_contig1513.3847.1|Name=mRNA_H-canaliculatus_F_contig1513.3847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=207bp
GGGGRPGAGPLAAKARGIRLLLADGFGSWGGSRAVGRVGKVGGWWGWTAG
GGGYGEKLSARLSRFGVGKGWGAAVPPRFPIQPAAVVTAISELLFACCPS
FPSSEVGCVRGNTFPAVLCQDDNVSAADTSGKEGMGGWGVISCLITSCWT
ILLLLLRLRLLLRFLYMVRVGKGRNGRDPALSPAVPRHRRLGLLLHLSSV
RERLAP*
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mRNA from alignment at H-canaliculatus_F_contig1513:74..749+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1513.3847.1 ID=mRNA_H-canaliculatus_F_contig1513.3847.1|Name=mRNA_H-canaliculatus_F_contig1513.3847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=676bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1513:74..749+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCAGGCCAGGGGCGGGACCCTTGGCAGCGAAGGCGCGAGG
CATCCGTTTGTTGCTGGCAGACGGTTTCGGATCTTGGGGAGGGTCGAGAG
CCGTAGGAAGGGTGGGTAAGGTAGGTGGATGGTGGGGATGGACGGCTGGC
GGGGGAGGGTACGGGGAGAAGCTTTCGGCGAGACTCTCGCGTTTTGGGGT
CGGAAAGGGGTGGGGGGCAGCGGTTCCGCCGCGTTTTCCCATACAGCCCG
CTGCTGTCGTTACGGCCATTTCGGAGCTGCTCTTCGCGTGCTGCCCGTCC
TTCCCATCGTCAGAGGTTGGGTGCGTACGTGGGAACACCTTTCCAGCGGT
TTTGTGTCAGGATGACAATGTGAGTGCTGCCGACACAAGTGGAAAGGAAG
GGATGGGGGGATGGGGTGTAATCTCCTGTCTCATCACGTCGTGTTGGACG
ATCCTTCTCCTCCTGCTGCGGCTGCGGTTGCTGCTGCGGTTTCTCTACAT
GGTAAGGGTAGGGAAAGGAAGGAACGGGAGGGACCCCGCGTTATCTCCTG
CTGTCCCCCGTCACCGCCGTCTCGGCTTGCTTCTGCACCTATCGAGTGTC
CGCGAACGTCTTGCCCCTTGAAGCGGTCCTTCGCGATCGAGGCGCTCTCG
GTGTCGCAGAAGTCAACGAAGCCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1513:74..749+

>mRNA_H-canaliculatus_F_contig1513.3847.1 ID=mRNA_H-canaliculatus_F_contig1513.3847.1|Name=mRNA_H-canaliculatus_F_contig1513.3847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1242bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1513:74..749+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCAGGCCAGGGGCGGGACCCTTGGCAGCGAAGGCGCGAGG
CATCCGTTTGTTGCTGGCAGACGGTTTCGGATCTTGGGGAGGGTCGAGAG
CCGTAGGAAGGGTGGGTAAGGTAGGTGGATGGTGGGGATGGACGGCTGGC
GGGGGAGGGTACGGGGAGAAGCTTTCGGCGAGACTCTCGCGTTTTGGGGT
CGGAAAGGGGTGGGGGGCAGCGGTTCCGCCGCGTTTTCCCATACAGCCCG
CTGCTGTCGTTACGGCCATTTCGGAGCTGCTCTTCGCGTGCTGCCCGTCC
TTCCCATCGTCAGAGGTTGGGTGCGTACGTGGGAACACCTTTCCAGCGGT
TTTGTGTCAGGATGACAATGTGAGTGCTGCCGACACAAGTGGAAAGGAAG
GGATGGGGGGATGGGGTGTAATCTCCTGTCTCATCACGTCGTGTTGGACG
ATCCTTCTCCTCCTGCTGCGGCTGCGGTTGCTGCTGCGGTTTCTCTACAT
GGTAAGGGTAGGGAAAGGAAGGAACGGGAGGGACCCCGCGTTATCTCCTG
CTGTCCCCCGTCACCGCCGTCTCGGCTTGCTTCTGCACCTATCGAGTGTC
CGCGAACGTCTTGCCCCTTGAGGGGGGGGGGGCAGGCCAGGGGCGGGACC
CTTGGCAGCGAAGGCGCGAGGCATCCGTTTGTTGCTGGCAGACGGTTTCG
GATCTTGGGGAGGGTCGAGAGCCGTAGGAAGGGTGGGTAAGGTAGGTGGA
TGGTGGGGATGGACGGCTGGCGGGGGAGGGTACGGGGAGAAGCTTTCGGC
GAGACTCTCGCGTTTTGGGGTCGGAAAGGGGTGGGGGGCAGCGGTTCCGC
CGCGTTTTCCCATACAGCCCGCTGCTGTCGTTACGGCCATTTCGGAGCTG
CTCTTCGCGTGCTGCCCGTCCTTCCCATCGTCAGAGGTTGGGTGCGTACG
TGGGAACACCTTTCCAGCGGTTTTGTGTCAGGATGACAATGTGAGTGCTG
CCGACACAAGTGGAAAGGAAGGGATGGGGGGATGGGGTGTAATCTCCTGT
CTCATCACGTCGTGTTGGACGATCCTTCTCCTCCTGCTGCGGCTGCGGTT
GCTGCTGCGGTTTCTCTACATGGTAAGGGTAGGGAAAGGAAGGAACGGGA
GGGACCCCGCGTTATCTCCTGCTGTCCCCCGTCACCGCCGTCTCGGCTTG
CTTCTGCACCTATCGAGTGTCCGCGAACGTCTTGCCCCTTGA
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