mRNA_H-canaliculatus_F_contig15112.3841.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15112.3841.1
Unique NamemRNA_H-canaliculatus_F_contig15112.3841.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15112.3841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15112contigH-canaliculatus_F_contig15112:563..2184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size769
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.5505435-CDS-H-canaliculatus_F_contig15112:562..9791622929254.5505435-CDS-H-canaliculatus_F_contig15112:562..979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15112 563..979 +
1696845738.0098546-CDS-H-canaliculatus_F_contig15112:562..9791696845738.0098546-CDS-H-canaliculatus_F_contig15112:562..979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15112 563..979 +
1622929254.5616355-CDS-H-canaliculatus_F_contig15112:1832..21831622929254.5616355-CDS-H-canaliculatus_F_contig15112:1832..2183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15112 1833..2183 +
1696845738.0195608-CDS-H-canaliculatus_F_contig15112:1832..21831696845738.0195608-CDS-H-canaliculatus_F_contig15112:1832..2183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15112 1833..2183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15112.3841.1prot_H-canaliculatus_F_contig15112.3841.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15112 563..2183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15112.3841.1

>prot_H-canaliculatus_F_contig15112.3841.1 ID=prot_H-canaliculatus_F_contig15112.3841.1|Name=mRNA_H-canaliculatus_F_contig15112.3841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
AKATTSTASPSLNATVQACASGRSPVAVVSAPSERSKTVTSSSDSGNAGR
IIRRARRVNTKRAAKRAATSQFKARGGHFVSDLLVAAGQGMAGRSWKDET
GAASVHEESCGSPEPGKTKKMWSEDAIKNGVGGQRQQEKAHSSTRGDKPD
ANAVATSAAAPAGGSEDRGTEYVFGQPAAVQGGETVAALAAGAAVAALAA
AAATAIAATAVVAAGLAAAANEQAAASQRAAAIEQAKAEEQATAEAAATA
AAAATR
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mRNA from alignment at H-canaliculatus_F_contig15112:563..2184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15112.3841.1 ID=mRNA_H-canaliculatus_F_contig15112.3841.1|Name=mRNA_H-canaliculatus_F_contig15112.3841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1622bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15112:563..2184+ (Hapterophycus canaliculatus Oshoro5f female)
GCGAAAGCGACGACGTCTACAGCATCGCCGTCATTGAATGCTACCGTACA
GGCGTGCGCGTCGGGTCGCTCTCCAGTCGCTGTCGTGAGTGCTCCTTCAG
AAAGGAGTAAGACCGTGACGTCTTCCAGCGACAGCGGCAACGCCGGTAGG
ATTATTCGGAGGGCTCGCAGGGTGAACACCAAGCGGGCAGCCAAGCGGGC
AGCCACGTCCCAATTCAAGGCAAGGGGTGGCCACTTCGTCAGCGACTTGC
TTGTGGCTGCCGGGCAAGGGATGGCAGGGAGGAGCTGGAAGGACGAGACT
GGTGCTGCCTCGGTGCACGAAGAATCCTGCGGCTCCCCGGAACCGGGCAA
GACCAAGAAGATGTGGTCCGAAGATGCTATCAAGAACGGTGTGGGCGGGC
AACGCCAACAGGAGAAGGTGCGTGTGTGTACTCGGGTGAGCGTGTGCCGT
TGGGTCTTTGCCTAAGGGTCATGCTTGCACTTTACGCTTCACATCGTGCT
AGATGTGCCGTGTGAACACTACGCAGAACATACAGACTGGAAGATAACCC
GCGAACGTTGACCGTGGTGAAGCCGGGCGAGCCGTACATGTCTCTCAGCG
TCGTCTAAACACAAGCTTGTGCCTAGACTTCAAATCACTTTTTTGGAAAT
AGATGCTTCTCACCACAAAGTCGAACGCTTGTTGGGATGGGTTCGGTCGC
TTCGCGTCTTACCTGAGAACTTCTATTCTGCTGGTTTTATTTCGCTTGTT
TTCCACTCCAACTGTGATCCCCGCTCTCGCGGTGCTCTCCGAGTTTCCAC
CATGTAGACAGTGTCGAGTGCTTTCACTCCGTGCCGTGGTTCTGCTGCGG
AGCCTTCGCGTGTGACCAAAATGACTGATGTGTATGACAAGTATGACTGA
TATGCAGGCCCCGGTATTCCAAATGGTAGGACGCAATCCTGCACATCAAT
TTCGTCGGTCGTTTCGCGTGGACAGGCTGGTCAAGTAAGAGGACGACCAG
TTGAAATGTTGCCATGAGACTGCTCGCACTCAACACCGCGATGTGCATCG
CAAACAAGTGCTCTTGGGTGTTCGGCGTACCGCGGGGTGTTGAGTGTGCC
AGTGCTGGAGAAAAATCCACACATGTCGCGTTCGTTGCAAATCTGGTGGA
CGCTTCATGTTCATCGCTCCGCGAAAGTTCTCACCGGTCACCGCTACCTC
TTTCGAATCTCCCTGAGCTTCGTCGTTACGCCCTATCGTGACGCTTGCAT
ACACGCCGTTACGGTCCCAGGCCCACAGCAGCACCAGGGGCGACAAACCG
GATGCCAACGCCGTAGCGACGAGTGCTGCTGCGCCCGCTGGAGGATCCGA
AGACCGCGGTACCGAGTACGTGTTCGGGCAGCCCGCAGCCGTCCAAGGGG
GGGAGACGGTGGCGGCACTAGCGGCAGGAGCAGCAGTAGCGGCGCTCGCA
GCCGCAGCAGCGACAGCTATAGCTGCCACGGCCGTGGTGGCAGCAGGACT
AGCTGCCGCAGCAAACGAACAAGCGGCGGCTTCCCAACGAGCGGCGGCTA
TAGAGCAGGCGAAGGCTGAGGAGCAAGCGACTGCGGAAGCAGCGGCGACG
GCGGCCGCGGCGGCAACACGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15112:563..2184+

>mRNA_H-canaliculatus_F_contig15112.3841.1 ID=mRNA_H-canaliculatus_F_contig15112.3841.1|Name=mRNA_H-canaliculatus_F_contig15112.3841.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15112:563..2184+ (Hapterophycus canaliculatus Oshoro5f female)
GCGAAAGCGACGACGTCTACAGCATCGCCGTCATTGAATGCTACCGTACA
GGCGTGCGCGTCGGGTCGCTCTCCAGTCGCTGTCGTGAGTGCTCCTTCAG
AAAGGAGTAAGACCGTGACGTCTTCCAGCGACAGCGGCAACGCCGGTAGG
ATTATTCGGAGGGCTCGCAGGGTGAACACCAAGCGGGCAGCCAAGCGGGC
AGCCACGTCCCAATTCAAGGCAAGGGGTGGCCACTTCGTCAGCGACTTGC
TTGTGGCTGCCGGGCAAGGGATGGCAGGGAGGAGCTGGAAGGACGAGACT
GGTGCTGCCTCGGTGCACGAAGAATCCTGCGGCTCCCCGGAACCGGGCAA
GACCAAGAAGATGTGGTCCGAAGATGCTATCAAGAACGGTGTGGGCGGGC
AACGCCAACAGGAGAAGGCGAAAGCGACGACGTCTACAGCATCGCCGTCA
TTGAATGCTACCGTACAGGCGTGCGCGTCGGGTCGCTCTCCAGTCGCTGT
CGTGAGTGCTCCTTCAGAAAGGAGTAAGACCGTGACGTCTTCCAGCGACA
GCGGCAACGCCGGTAGGATTATTCGGAGGGCTCGCAGGGTGAACACCAAG
CGGGCAGCCAAGCGGGCAGCCACGTCCCAATTCAAGGCAAGGGGTGGCCA
CTTCGTCAGCGACTTGCTTGTGGCTGCCGGGCAAGGGATGGCAGGGAGGA
GCTGGAAGGACGAGACTGGTGCTGCCTCGGTGCACGAAGAATCCTGCGGC
TCCCCGGAACCGGGCAAGACCAAGAAGATGTGGTCCGAAGATGCTATCAA
GAACGGTGTGGGCGGGCAACGCCAACAGGAGAAGGCCCACAGCAGCACCA
GGGGCGACAAACCGGATGCCAACGCCGTAGCGACGAGTGCTGCTGCGCCC
GCTGGAGGATCCGAAGACCGCGGTACCGAGTACGTGTTCGGGCAGCCCGC
AGCCGTCCAAGGGGGGGAGACGGTGGCGGCACTAGCGGCAGGAGCAGCAG
TAGCGGCGCTCGCAGCCGCAGCAGCGACAGCTATAGCTGCCACGGCCGTG
GTGGCAGCAGGACTAGCTGCCGCAGCAAACGAACAAGCGGCGGCTTCCCA
ACGAGCGGCGGCTATAGAGCAGGCGAAGGCTGAGGAGCAAGCGACTGCGG
AAGCAGCGGCGACGGCGGCCGCGGCGGCAACACGCGCCCACAGCAGCACC
AGGGGCGACAAACCGGATGCCAACGCCGTAGCGACGAGTGCTGCTGCGCC
CGCTGGAGGATCCGAAGACCGCGGTACCGAGTACGTGTTCGGGCAGCCCG
CAGCCGTCCAAGGGGGGGAGACGGTGGCGGCACTAGCGGCAGGAGCAGCA
GTAGCGGCGCTCGCAGCCGCAGCAGCGACAGCTATAGCTGCCACGGCCGT
GGTGGCAGCAGGACTAGCTGCCGCAGCAAACGAACAAGCGGCGGCTTCCC
AACGAGCGGCGGCTATAGAGCAGGCGAAGGCTGAGGAGCAAGCGACTGCG
GAAGCAGCGGCGACGGCGGCCGCGGCGGCAACACGC
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