mRNA_H-canaliculatus_F_contig15109.3836.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15109.3836.1
Unique NamemRNA_H-canaliculatus_F_contig15109.3836.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15109.3836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15109contigH-canaliculatus_F_contig15109:901..2055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15109.3836.1prot_H-canaliculatus_F_contig15109.3836.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15109 901..2055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.8678012-CDS-H-canaliculatus_F_contig15109:900..9961622929253.8678012-CDS-H-canaliculatus_F_contig15109:900..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 901..996 -
1696845737.7565336-CDS-H-canaliculatus_F_contig15109:900..9961696845737.7565336-CDS-H-canaliculatus_F_contig15109:900..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 901..996 -
1622929253.8935869-CDS-H-canaliculatus_F_contig15109:1229..13461622929253.8935869-CDS-H-canaliculatus_F_contig15109:1229..1346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 1230..1346 -
1696845737.7653615-CDS-H-canaliculatus_F_contig15109:1229..13461696845737.7653615-CDS-H-canaliculatus_F_contig15109:1229..1346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 1230..1346 -
1622929253.911728-CDS-H-canaliculatus_F_contig15109:1974..20551622929253.911728-CDS-H-canaliculatus_F_contig15109:1974..2055Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 1975..2055 -
1696845737.775337-CDS-H-canaliculatus_F_contig15109:1974..20551696845737.775337-CDS-H-canaliculatus_F_contig15109:1974..2055Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 1975..2055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15109.3836.1

>prot_H-canaliculatus_F_contig15109.3836.1 ID=prot_H-canaliculatus_F_contig15109.3836.1|Name=mRNA_H-canaliculatus_F_contig15109.3836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
RSSLPDNLEQLLRPVVMVLPVWELMAQATGLPSDPVSLLEGSPSLVGVAG
GKAVGGGQVLASSTAQTPLVASRECSPVALATTRTSATPSTNTTPAAP
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mRNA from alignment at H-canaliculatus_F_contig15109:901..2055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15109.3836.1 ID=mRNA_H-canaliculatus_F_contig15109.3836.1|Name=mRNA_H-canaliculatus_F_contig15109.3836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1155bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15109:901..2055- (Hapterophycus canaliculatus Oshoro5f female)
AGGTCCAGCTTGCCCGACAACCTCGAGCAGCTGCTCCGCCCCGTGGTCAT
GGTTCTGCCGGTGTGGGAGCTCATGGCCCAGGTGAGAGAACCAGTGTTCA
AAGCGTGGATGAGGCCGTTGTCACCGCCGCTTTCTGTGCAGGGGGTACGG
ATGACCGTCATGACGGCGATGGGCGCAGGGTCCTCGTGTGCAGTGAAAAG
AGCGTGAACACTGTGCTTGCCGGAGTCGTATGACGCGAGAGCGGCTGGCT
TCTCGACGTCGCAAGAGTCCATCTTTTCGAACAGCATTATGCGCTCAAAT
ACGTTCGTTTCCTTCCCCCGAGGCCCAGCCAGCTTAAGGCACCTTTGTTT
GTTTGGAAAAGGGTCAGCAAGGCGGGAAGAGTGCCTCCTATGACACGTTT
GGGTTGGCGTCTCAGGAGGCTTGTATGGCATTCCATTCCGCGATGGTTCA
GAGCGTTGGGCGAAATAAAACATAAACCTGGATTGCGGTGAGATGGACGT
GGTTGAAAGTGGCAATTTCGTGTTAGAAACGAGAGAGAGACAGGGGATGG
ATTCATCCGCCAGCGTACAAACGTGCCTCATCTACACGAAACAGCTGCAT
TGTTTGAACGATTCGCACCTTTCCGACGAGGAGCTGCCCCTTCGTCAACT
CCCCGCACTCCTTTGAAATAAACGTCGGCTTTGGCTTTCTCCTCGGCGCG
GCTTCTCAGGCGACGGGCCTGCCATCGGACCCGGTGTCCCTGCTGGAGGG
CTCCCCGTCTCTGGTCGGTGTGGCAGGCGGGAAGGCTGTTGGTGGAGGCC
AGGTGCTGGCTTCGTCGACCGCTCAGGTGAAAGGGATAGTCACACTTTGT
GCGGGCACATGCAAACGACATTCGGTCGAAGGTAGAAGCTCTTGGATAGT
CCGCGACATGCAACTCGGCAGGAGGATAACCGCGGATCGTCGGGTTGTTG
AGGCTTCGCTCGCGACATGGGGGTTCTGAATAACACGTTGCTCCCGCTTG
CTCTGTCGCCGTTCGATTTCCGCTCTGTGGTGTCTGTCTTGTTGTGAACC
CCTTTACAGACGCCGCTCGTGGCATCCCGCGAGTGTTCGCCTGTGGCTCT
GGCCACCACCCGGACAAGCGCCACCCCAAGCACCAACACCACCCCCGCCG
CCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15109:901..2055-

>mRNA_H-canaliculatus_F_contig15109.3836.1 ID=mRNA_H-canaliculatus_F_contig15109.3836.1|Name=mRNA_H-canaliculatus_F_contig15109.3836.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15109:901..2055- (Hapterophycus canaliculatus Oshoro5f female)
AGGTCCAGCTTGCCCGACAACCTCGAGCAGCTGCTCCGCCCCGTGGTCAT
GGTTCTGCCGGTGTGGGAGCTCATGGCCCAGAGGTCCAGCTTGCCCGACA
ACCTCGAGCAGCTGCTCCGCCCCGTGGTCATGGTTCTGCCGGTGTGGGAG
CTCATGGCCCAGGCGACGGGCCTGCCATCGGACCCGGTGTCCCTGCTGGA
GGGCTCCCCGTCTCTGGTCGGTGTGGCAGGCGGGAAGGCTGTTGGTGGAG
GCCAGGTGCTGGCTTCGTCGACCGCTCAGGCGACGGGCCTGCCATCGGAC
CCGGTGTCCCTGCTGGAGGGCTCCCCGTCTCTGGTCGGTGTGGCAGGCGG
GAAGGCTGTTGGTGGAGGCCAGGTGCTGGCTTCGTCGACCGCTCAGACGC
CGCTCGTGGCATCCCGCGAGTGTTCGCCTGTGGCTCTGGCCACCACCCGG
ACAAGCGCCACCCCAAGCACCAACACCACCCCCGCCGCCCCTACGCCGCT
CGTGGCATCCCGCGAGTGTTCGCCTGTGGCTCTGGCCACCACCCGGACAA
GCGCCACCCCAAGCACCAACACCACCCCCGCCGCCCCT
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