mRNA_H-canaliculatus_F_contig15109.3835.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15109.3835.1
Unique NamemRNA_H-canaliculatus_F_contig15109.3835.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15109.3835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15109contigH-canaliculatus_F_contig15109:11..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size454
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.8137321-CDS-H-canaliculatus_F_contig15109:10..1921622929253.8137321-CDS-H-canaliculatus_F_contig15109:10..192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 11..192 -
1696845737.7376626-CDS-H-canaliculatus_F_contig15109:10..1921696845737.7376626-CDS-H-canaliculatus_F_contig15109:10..192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 11..192 -
1622929253.8257682-CDS-H-canaliculatus_F_contig15109:579..8501622929253.8257682-CDS-H-canaliculatus_F_contig15109:579..850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 580..850 -
1696845737.7468638-CDS-H-canaliculatus_F_contig15109:579..8501696845737.7468638-CDS-H-canaliculatus_F_contig15109:579..850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15109 580..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15109.3835.1prot_H-canaliculatus_F_contig15109.3835.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15109 11..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15109.3835.1

>prot_H-canaliculatus_F_contig15109.3835.1 ID=prot_H-canaliculatus_F_contig15109.3835.1|Name=mRNA_H-canaliculatus_F_contig15109.3835.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
HHLDDGHRRLSCSGRQQCSLSVLEEVSAACVVGGSNGGLGEDDPSRYRHS
YCCCPCCPCCPRPYRGTDGDAVGCGRRRGQCFALGCRQQEGYRRRGAPSF
QLRVVVDGNCGSAALHWRRQRWGRRMRQREWERRRQHQRQHQQREREGED
W
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mRNA from alignment at H-canaliculatus_F_contig15109:11..850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15109.3835.1 ID=mRNA_H-canaliculatus_F_contig15109.3835.1|Name=mRNA_H-canaliculatus_F_contig15109.3835.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15109:11..850- (Hapterophycus canaliculatus Oshoro5f female)
CATCACCTCGACGACGGCCATCGCCGGCTCAGCTGCAGCGGCCGACAACA
GTGCAGCCTCAGCGTCCTCGAGGAGGTGTCTGCCGCTTGCGTTGTCGGCG
GCAGCAACGGCGGGCTCGGCGAAGATGACCCCAGCCGATACCGCCACAGC
TACTGCTGCTGTCCCTGCTGTCCCTGCTGTCCCCGCCCCTACCGCGGTAC
CGATGGCGACGCTGTTGGGTGTGGGAGAAGACGGGGGCAGTGCTTCGCTC
TGGGGTGTCGGCAACAAGAAGGTATCTGCTGGCGACAGGGCGTGAATGTT
GGTGTTGTTGTTGTTGACGTCGACATTAACGCTGCTGATTTTTTGTTGTT
ATCGTTGATGCTACTGTAGTATCGTCCCCTCTGTTGCTGTCTTTGTTGTG
GTTCCTGATGTTGTTGCCAGGAGGCGAGTGTTGGATTTGCGGCGGCTGTC
AGACCTGCCTTCACTACCCACCACGTGGTTTTGCTCACTTCTGCGGGAAG
CGTCCATGCCGTCATGTCTACCGTACCGTAAGCGGTACCGTTGTAGGGAC
CCACATCGTACATGCGCGTGTCCTGCGTGACGGATGGTCAACGATCCAAC
GATTCGACGGGATGTTTGTTTCTAATTTTTTGCTTGGTTGTATGTTTGTG
TACTGCAGGGTACCGACGACGAGGGGCCCCCTCTTTCCAGCTCCGTGTCG
TCGTCGACGGCAACTGTGGCTCTGCCGCTCTCCACTGGCGGCGGCAGCGG
TGGGGACGGCGAATGCGACAACGTGAGTGGGAGCGGCGTCGTCAACACCA
GCGGCAGCACCAGCAGCGAGAGCGAGAGGGGGAAGACTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15109:11..850-

>mRNA_H-canaliculatus_F_contig15109.3835.1 ID=mRNA_H-canaliculatus_F_contig15109.3835.1|Name=mRNA_H-canaliculatus_F_contig15109.3835.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15109:11..850- (Hapterophycus canaliculatus Oshoro5f female)
CATCACCTCGACGACGGCCATCGCCGGCTCAGCTGCAGCGGCCGACAACA
GTGCAGCCTCAGCGTCCTCGAGGAGGTGTCTGCCGCTTGCGTTGTCGGCG
GCAGCAACGGCGGGCTCGGCGAAGATGACCCCAGCCGATACCGCCACAGC
TACTGCTGCTGTCCCTGCTGTCCCTGCTGTCCCCGCCCCTACCGCGGTAC
CGATGGCGACGCTGTTGGGTGTGGGAGAAGACGGGGGCAGTGCTTCGCTC
TGGGGTGTCGGCAACAAGAAGCATCACCTCGACGACGGCCATCGCCGGCT
CAGCTGCAGCGGCCGACAACAGTGCAGCCTCAGCGTCCTCGAGGAGGTGT
CTGCCGCTTGCGTTGTCGGCGGCAGCAACGGCGGGCTCGGCGAAGATGAC
CCCAGCCGATACCGCCACAGCTACTGCTGCTGTCCCTGCTGTCCCTGCTG
TCCCCGCCCCTACCGCGGTACCGATGGCGACGCTGTTGGGTGTGGGAGAA
GACGGGGGCAGTGCTTCGCTCTGGGGTGTCGGCAACAAGAAGGGTACCGA
CGACGAGGGGCCCCCTCTTTCCAGCTCCGTGTCGTCGTCGACGGCAACTG
TGGCTCTGCCGCTCTCCACTGGCGGCGGCAGCGGTGGGGACGGCGAATGC
GACAACGTGAGTGGGAGCGGCGTCGTCAACACCAGCGGCAGCACCAGCAG
CGAGAGCGAGAGGGGGAAGACTGGGGTACCGACGACGAGGGGCCCCCTCT
TTCCAGCTCCGTGTCGTCGTCGACGGCAACTGTGGCTCTGCCGCTCTCCA
CTGGCGGCGGCAGCGGTGGGGACGGCGAATGCGACAACGTGAGTGGGAGC
GGCGTCGTCAACACCAGCGGCAGCACCAGCAGCGAGAGCGAGAGGGGGAA
GACTGG
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