mRNA_H-canaliculatus_F_contig15097.3829.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15097.3829.1
Unique NamemRNA_H-canaliculatus_F_contig15097.3829.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: D7G7E3_ECTSI (FA_desaturase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E3_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.720e-70
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 QKPRVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 324
            ++PRVQE +SR+CNAWTLWHHGLWVMHHVYGHHSFTGDP+RDPDLVHARPYLRKS+LAP +QYDPFLV+WQRF AP FMMVMPGASLGQTQAYLRGLREGNLWHVSIT
Sbjct:  174 KRPRVQEAVSRLCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPAEQYDPFLVKWQRFFAPAFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 281
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.100e-67
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 QKPRVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 324
            ++PRVQEV+SR+CNAWTLWHHGLWVMHHVYGHHSFTGDP+RDPDLVHARPYLRKS+LAP +QYDPFLV+WQRF AP FMMVMPGASLGQTQAYLRGLREGNLWHVSIT
Sbjct:  291 KRPRVQEVVSRLCNAWTLWHHGLWVMHHVYGHHSFTGDPERDPDLVHARPYLRKSILAPAEQYDPFLVKWQRFFAPAFMMVMPGASLGQTQAYLRGLREGNLWHVSIT 398
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A835YLX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.900e-42
Identity = 63/100 (63.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:   16 QEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLRGLREGNLWHV 315
            QE LSR CNAWTLW+H +W++HHVYGHHSFTGDP RDPDL+HARP++RKS+L+P  +Y  + V WQ  +AP FM V+PG SLGQT +Y RG  +G++W V
Sbjct:  192 QEALSRCCNAWTLWNHAMWMLHHVYGHHSFTGDPTRDPDLIHARPFIRKSLLSPLHEYFRWFVDWQHVVAPGFMCVIPGQSLGQTISYARGAAQGHVWRV 291
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A0G4FKE0_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKE0_9ALVE)

HSP 1 Score: 86.7 bits (213), Expect = 1.390e-17
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:    4 KPRVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFL---VRWQRFLAPLFMMVMPGASLGQTQAYLRGL 291
            KP V E+LSR+CNA   W H +W  HHVYGHHSFTGD  +DPD  + RP+ RK    P+D    FL   +  Q   A + + V PG   GQ   YL+ L
Sbjct:  270 KPWVNELLSRLCNASQSWFHHVWARHHVYGHHSFTGDVAKDPDTRYGRPFFRKH---PDDAEKKFLAVGLENQPASALIALAVFPGQFFGQGLLYLQAL 365
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU)

HSP 1 Score: 85.5 bits (210), Expect = 3.130e-17
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:   10 RVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAY-LRGLREGNLWHVSI 321
            ++  +LSR  N   LW H LW+MHHV  HHSFTGD + DPD++H RP+++K+       Y    + + RF+  L  +V PG  +GQ   Y L     G +W +  
Sbjct:  183 KINTLLSRTWNGIALWDHQLWLMHHVVRHHSFTGDDNWDPDVLHLRPFVQKTPYDKRSGYISTALNFPRFMTLLVSVVFPGLFVGQCVMYHLMWPLRGRIWRMEF 287
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A6C0KGR0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KGR0_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-14
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   13 VQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKS--VLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAY-LRGLREGNLWHVSI 321
            +  +LSR+     LW+H LW  HH   HH +TGD ++DPD++++RP+LRKS  +   + ++   L+    F   LF  + PG +LGQT  Y +  +    LW + +
Sbjct:  158 INNILSRIIQGMCLWNHTLWSYHHCIRHHQYTGDIEKDPDMINSRPFLRKSKQIRPRKSEFTKILLS---FKTVLFNTIYPGTALGQTIMYHVYWINYRKLWKMDL 260
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: L8H5B9_ACACA (Fatty acid desaturase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5B9_ACACA)

HSP 1 Score: 71.2 bits (173), Expect = 3.490e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 QKPRVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAP-EDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLR 285
            + P V  VL  + + W LW H LW+ HH YGHHS+TG   RDPDLV+ + + RK   +P + Q+       Q ++  + +  +P   +GQ+  YLR
Sbjct:  183 KNPLVNRVLHTLWSDWNLWSHFLWLRHHTYGHHSYTGVYRRDPDLVNGQVFFRKHSESPFQAQHTQ-----QWWVTYVLLWFLPNQHVGQSLLYLR 273
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BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ)

HSP 1 Score: 70.1 bits (170), Expect = 8.700e-12
Identity = 31/101 (30.69%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:   19 EVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARPYLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLRGLR-EGNLWHVS 318
            +V +R+  A+ L+   LW+ HH + HH++TGD + DPD+++ +P++RK    P  +Y  +  +    +  + M ++PG  +GQ   Y    R +G +W +S
Sbjct:  185 DVFTRIVGAFLLFRPELWMTHHSFRHHAYTGDENLDPDIINYQPFIRKVDRVPAKKYMKYTNKILGLVTCITMWLLPGQGVGQALIYEFTWRIQGRIWRMS 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15097.3829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G7E3_ECTSI1.720e-7088.89FA_desaturase domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KKY7_9PHAE2.100e-6789.81Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YLX3_9STRA1.900e-4263.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4FKE0_9ALVE1.390e-1746.46Cytochrome b5 heme-binding domain-containing prote... [more]
A0A5K0U7T4_9VIRU3.130e-1738.10Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A6C0KGR0_9ZZZZ1.190e-1434.91Uncharacterized protein n=1 Tax=viral metagenome T... [more]
L8H5B9_ACACA3.490e-1237.50Fatty acid desaturase subfamily protein n=1 Tax=Ac... [more]
A0A0V0QTF1_PSEPJ8.700e-1230.69Cytochrome b5-like heme/steroid binding domain n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15097contigH-canaliculatus_F_contig15097:508..2168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15097.3829.1prot_H-canaliculatus_F_contig15097.3829.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15097 508..2168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.9752617-CDS-H-canaliculatus_F_contig15097:507..6281622929250.9752617-CDS-H-canaliculatus_F_contig15097:507..628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 508..628 -
1696845736.4221237-CDS-H-canaliculatus_F_contig15097:507..6281696845736.4221237-CDS-H-canaliculatus_F_contig15097:507..628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 508..628 -
1622929250.987703-CDS-H-canaliculatus_F_contig15097:1516..16131622929250.987703-CDS-H-canaliculatus_F_contig15097:1516..1613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 1517..1613 -
1696845736.4317985-CDS-H-canaliculatus_F_contig15097:1516..16131696845736.4317985-CDS-H-canaliculatus_F_contig15097:1516..1613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 1517..1613 -
1622929250.999096-CDS-H-canaliculatus_F_contig15097:2059..21681622929250.999096-CDS-H-canaliculatus_F_contig15097:2059..2168Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 2060..2168 -
1696845736.4435902-CDS-H-canaliculatus_F_contig15097:2059..21681696845736.4435902-CDS-H-canaliculatus_F_contig15097:2059..2168Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15097 2060..2168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15097.3829.1

>prot_H-canaliculatus_F_contig15097.3829.1 ID=prot_H-canaliculatus_F_contig15097.3829.1|Name=mRNA_H-canaliculatus_F_contig15097.3829.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
QKPRVQEVLSRVCNAWTLWHHGLWVMHHVYGHHSFTGDPDRDPDLVHARP
YLRKSVLAPEDQYDPFLVRWQRFLAPLFMMVMPGASLGQTQAYLRGLREG
NLWHVSIT*
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mRNA from alignment at H-canaliculatus_F_contig15097:508..2168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15097.3829.1 ID=mRNA_H-canaliculatus_F_contig15097.3829.1|Name=mRNA_H-canaliculatus_F_contig15097.3829.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15097:508..2168- (Hapterophycus canaliculatus Oshoro5f female)
CAGAAACCTCGGGTGCAGGAAGTCTTGTCGCGAGTCTGCAACGCCTGGAC
CCTGTGGCACCACGGGCTTTGGGTGATGCACCACGTCTACGGCCACCACT
CGTTCACGGGTGAGCGTCGTTGTTGCCGCAGGTTGCCGTCGTTGTGGTAG
TCGCGCCGCCTCTCGAGGTCTCCCGGCGAAGCCGGCCCGCTTCTCGCCGG
TTCGCGCTGCGCCGCACCAGAGCCGGCCAAGTTAAGTTTTGCAGGAAGAT
GATACGCGCGCTTTTAGAAGCGCCCTACCGCCAAGCGTGTCGTCTCGCGG
ACGGTGATGGGCACGCCCGCGACCGACGTTAGGCCAGCGCTTGGAAGGGT
TCAGGATTACTGCGCCTGCGCGCGCAGCCGTGCAACTGTTCGCAGCTCGG
CATTTAGCCTTGACCAGCCGCGCTCCTTGAGCGCACGTGTGGACTTTGTA
CGACGCAGCCATGCCCAGGCAGCCCATGCGCCTTGGCGGCGACGTAGCCG
TGCGCCGGAATCGAAGCCCTCCCGCTTCCGCCTTGCCCTCCCCGGTTGGC
TGCAGGGGACCCTGATCGAGACCCAGACCTCGTGCACGCTCGCCCTTACC
TGAGGAAGAGTGTCCTCGCACCCGAAGACCAGTACGATCCCTTTTTAGTT
CGGTGAGGAGCGAGTAGACTCTGTCATGGTTCATTATTCGTGACGTCTAC
CACTCATTGACTTTTGGACGGGGAATGGCGAGGTTGGGAGAGAGAAAGCT
GCAAAGACGAGACCCTGGAGAGAAAATATGGGGAATCTGTTGTGATCGTG
GGAGTTCGATGAGGCGAGGGCTGGGAGGGTAGCACCCCGAGACGGCCGAC
ATCACGAGAAGCTCGTCTCGCAGCACTCGGCGAAAGGCTCACATGACGAA
GTTTGTGTTCATGGTTGCCGCTTTCTTCTCGGGTTGCCTCGAAGAGCTGT
GCCTTCTTTTCCCTTTGTTTCTCGTGCAGCTTTACACGGCCTGAAGCACA
CACCGCCCTCGCCCTTCCACCGACGAGACGTCCGGTGCAAGACTTCCACC
GTGTCCACCGAGCGCGATCGTGTGAATTTTTTTCGGAGGGGCGGCAGTGC
CACCTCAGACGCTTTGCTTCTTGTTTCCCATTTGCGATTCGAGAGTCTGA
CATTCCGATCAGCCCCTACAAACCTTAGTGCCGGCTGAGAACGGGCGACG
TCGCTGGTTGCTGTGTTGACAAGGGCTCGAGGTCTTGTGGCGTCACTCTC
TGCTTCTATCCGTCGCCCGCATAGTTTGCGGCATGCGCGTTGGCGGTCGC
CGCCGTCGTCTCTCTCGCGTGCGGTGCGATACCGCCGCCATGCTGCGAAA
ACGCACACACCACTTCGACCACTTTCACTCACGACTCCCGCCCTTTTCCG
TGCTGCAAAACGCTCAACGCGCACTTCACTCACTCACTTACTCACTCACG
AATACAAACTCGCACATGCGCATGGACTCACTTACTACACCTGCATCGTT
GACGCTCACGCACGACGACTTGGGGCGCGCGGCGTGACAGGTGGCAGCGA
TTCCTTGCCCCGCTGTTCATGATGGTGATGCCGGGAGCCAGCCTAGGGCA
GACGCAGGCGTACCTCCGAGGACTCCGAGAAGGGAACCTCTGGCACGTCT
CCATCACGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15097:508..2168-

>mRNA_H-canaliculatus_F_contig15097.3829.1 ID=mRNA_H-canaliculatus_F_contig15097.3829.1|Name=mRNA_H-canaliculatus_F_contig15097.3829.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15097:508..2168- (Hapterophycus canaliculatus Oshoro5f female)
CAGAAACCTCGGGTGCAGGAAGTCTTGTCGCGAGTCTGCAACGCCTGGAC
CCTGTGGCACCACGGGCTTTGGGTGATGCACCACGTCTACGGCCACCACT
CGTTCACGGCAGAAACCTCGGGTGCAGGAAGTCTTGTCGCGAGTCTGCAA
CGCCTGGACCCTGTGGCACCACGGGCTTTGGGTGATGCACCACGTCTACG
GCCACCACTCGTTCACGGGGGACCCTGATCGAGACCCAGACCTCGTGCAC
GCTCGCCCTTACCTGAGGAAGAGTGTCCTCGCACCCGAAGACCAGTACGA
TCCCTTTTTAGTTCGGGGACCCTGATCGAGACCCAGACCTCGTGCACGCT
CGCCCTTACCTGAGGAAGAGTGTCCTCGCACCCGAAGACCAGTACGATCC
CTTTTTAGTTCGGTGGCAGCGATTCCTTGCCCCGCTGTTCATGATGGTGA
TGCCGGGAGCCAGCCTAGGGCAGACGCAGGCGTACCTCCGAGGACTCCGA
GAAGGGAACCTCTGGCACGTCTCCATCACGTAAGTGGCAGCGATTCCTTG
CCCCGCTGTTCATGATGGTGATGCCGGGAGCCAGCCTAGGGCAGACGCAG
GCGTACCTCCGAGGACTCCGAGAAGGGAACCTCTGGCACGTCTCCATCAC
GTAA
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