mRNA_H-canaliculatus_F_contig15092.3827.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: D7G412_ECTSI (MSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G412_ECTSI) HSP 1 Score: 173 bits (439), Expect = 4.460e-51 Identity = 98/168 (58.33%), Postives = 116/168 (69.05%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVRVFISSSAAQSFAAXXXXXXXXXXXXXXXXXXXGVGMPSPAHPRGKDAPSATAGAFVSSPSSQTS 504
+VKTTEPRRYLVRPNQG++GPG E VNV LIEKECN L+ EG++ P SL K+SDKFLVQT GLG+ E+A+L SV AAKQ+EALTKIWATFNKTAIRNKKLNVR+ ++S AA+S +A SPA G D + GA +SP SQTS
Sbjct: 47 KVKTTEPRRYLVRPNQGMIGPGEREAVNVYLIEKECNLLIHEGVQTPSSLGKVSDKFLVQTVGLGEGEAALLTSVAAAKQTEALTKIWATFNKTAIRNKKLNVRISLASGAAKSLSAANSTAAASVAQ-------------SPARTVGSD----SGGAVFASPGSQTS 197
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A6H5KZG7_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG7_9PHAE) HSP 1 Score: 175 bits (443), Expect = 6.500e-50 Identity = 100/168 (59.52%), Postives = 116/168 (69.05%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVRVFISSSAAQSFAAXXXXXXXXXXXXXXXXXXXGVGMPSPAHPRGKDAPSATAGAFVSSPSSQTS 504
+VKTTEPRRYLVRPNQG++GPG E VNV LIEKECN L+ EG++ P SL K+SDKFLVQT GLGD E+A+L SV AAKQ+EALTKIWATFNKTAIRNKKLNVRV ++S AA+S +A SPA G D + GA +SP SQTS
Sbjct: 47 KVKTTEPRRYLVRPNQGMIGPGEREAVNVYLIEKECNLLIHEGVQTPSSLGKVSDKFLVQTVGLGDGEAALLTSVAAAKQTEALTKIWATFNKTAIRNKKLNVRVSLASGAAKSLSAANNTAAASVAQ-------------SPARTVGSD----SGGATFASPGSQTS 197
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO) HSP 1 Score: 89.7 bits (221), Expect = 4.510e-18 Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMR-NPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKT------AIRNKKLNVRVFISSS 330
+VKTT+PRRYLVRPNQGL+ PGG++ V +LL+EKE N LL+ R P+L + DKFLVQ+ + D + + K + LT +WAT + A+ NKKL+V+ ++ +
Sbjct: 51 KVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDAS-----KLASLKDYDELTSLWATVGNSPSTSTSAVANKKLHVKHVVAGN 162
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: G4YN91_PHYSP (MSP domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YN91_PHYSP) HSP 1 Score: 88.2 bits (217), Expect = 8.760e-18 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVR 312
+VKTT P RYLVRPNQGL+GP GS + V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R
Sbjct: 52 KVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLR---LDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRALSNKKLRCR 152
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: H3GM18_PHYRM (MSP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM18_PHYRM) HSP 1 Score: 89.0 bits (219), Expect = 1.150e-17 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVRVFISSS 330
+VKTT P RYLVRPNQGL+GP GS V V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R F+ S
Sbjct: 52 KVKTTRPLRYLVRPNQGLLGPNGSASVMVILQQKDCDELLR---LDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRALSNKKLRCR-FVQDS 157
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A0P1AK94_PLAHL (MSP domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK94_PLAHL) HSP 1 Score: 88.2 bits (217), Expect = 2.480e-17 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVR 312
+VKTT P RYLVRPNQGL+GP GS + V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R
Sbjct: 52 KVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLR---LDPAERQLANDKFLVQSIYVDDSFYEMVKTKSTKEMADELTNMWARTDKRALSNKKLRCR 152
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: W2I3E2_PHYPR (MSP domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2I3E2_PHYPR) HSP 1 Score: 88.2 bits (217), Expect = 2.620e-17 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVR 312
+VKTT P RYLVRPNQGL+GP GS + V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R
Sbjct: 52 KVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLR---LDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRALSNKKLRCR 152
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A662Y0F4_9STRA (MSP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0F4_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.700e-17 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVR 312
+VKTT P RYLVRPNQGL+GP GS + V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R
Sbjct: 54 KVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLR---LDPAERQLSNDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRALSNKKLRCR 154
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A6A3XZE6_9STRA (MSP domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XZE6_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.850e-17 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVR 312
+VKTT P RYLVRPNQGL+GP GS + V+L +K+C++LLR +P +DKFLVQ+ + D ++K+ + + ++ LT +WA +K A+ NKKL R
Sbjct: 52 KVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLR---LDPAERQLANDKFLVQSIYVDDGFYELVKTKSTKEMADELTNMWARTDKRALSNKKLRCR 152
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Match: A0A835YYD8_9STRA (PapD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.200e-17 Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 1 QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLSKISDKFLVQTAGLGDRESAVLKSVTAAKQSEALTKIWATFNKTAIRNKKLNVRVFISSSAA 336
+VKTTEP RYLV+PNQGL+ GGS + + ++E+E ++LL + +L DKFLVQ A + A + ++ A+ +E +T++WA NK +++NK++ V+ +SAA
Sbjct: 39 KVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLL--DVAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAA 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15092.3827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15092.3827.1 >prot_H-canaliculatus_F_contig15092.3827.1 ID=prot_H-canaliculatus_F_contig15092.3827.1|Name=mRNA_H-canaliculatus_F_contig15092.3827.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp QVKTTEPRRYLVRPNQGLVGPGGSEMVNVLLIEKECNQLLREGMRNPPSLback to top mRNA from alignment at H-canaliculatus_F_contig15092:193..2429+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15092.3827.1 ID=mRNA_H-canaliculatus_F_contig15092.3827.1|Name=mRNA_H-canaliculatus_F_contig15092.3827.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2237bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15092:193..2429+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15092:193..2429+ >mRNA_H-canaliculatus_F_contig15092.3827.1 ID=mRNA_H-canaliculatus_F_contig15092.3827.1|Name=mRNA_H-canaliculatus_F_contig15092.3827.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15092:193..2429+ (Hapterophycus canaliculatus Oshoro5f female)back to top |