mRNA_H-canaliculatus_F_contig15077.3818.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15077.3818.1
Unique NamemRNA_H-canaliculatus_F_contig15077.3818.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.510e-59
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FMLEMIKVPKRE RL+GML+KQLLQARQ+DMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD
Sbjct: 3215 EKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 3329
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 4.640e-59
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FMLEMIKVPKRE RL+GML+KQLLQARQ+DMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD
Sbjct: 2343 EKFMLEMIKVPKRELRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 2457
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A836C9A0_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.010e-40
Identity = 80/115 (69.57%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FMLEM  VP+R  R++ ML+K+ L  R +++R  AGL+ +AC DV+LS RLK+LL IILKLGN+LN+  TTGFTL+SLLKLNTAKAFDKKTSILHYLVMLA RNDPTLLDFKD
Sbjct:  597 EKFMLEMAAVPQRAPRIKAMLFKEQLFGRIDELRGTAGLVEAACDDVKLSLRLKRLLSIILKLGNELNQHATTGFTLESLLKLNTAKAFDKKTSILHYLVMLADRNDPTLLDFKD 711
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A812WW85_SYMMI (Daam2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WW85_SYMMI)

HSP 1 Score: 91.7 bits (226), Expect = 1.290e-20
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   61 LYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEG-QTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            L+KQ  ++R  ++      I  AC DV++S +LKK+L  ILK+GNQ+N+G Q  GFT+DSLLKL  AKAFDKKTSIL Y+VM+ +RND + L F +
Sbjct:   13 LHKQHFKSRLAELNMWINRIEGACDDVKMSLKLKKVLKTILKVGNQMNDGEQHLGFTVDSLLKLQNAKAFDKKTSILQYVVMVIQRNDESCLLFPE 108
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A7S1XVY3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVY3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.530e-20
Identity = 49/115 (42.61%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FM+EM+K+ K  +RL+ M+YK     R + +R     I  AC D+++S + + +L  IL++GNQ+NE +   F+LD+L KL+++KAFD +T++L YLVM+ +RND TLLD  +
Sbjct:  271 EKFMMEMLKLDKGSKRLEAMIYKSQFVERIQQIREDIQTIAKACDDLKMSGKFRTILRYILQIGNQMNEHEHKAFSLDALKKLSSSKAFDNRTTVLDYLVMVVKRNDETLLDIAE 385
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A7S3HTK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTK0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.980e-20
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQT-TGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            +Q+M  M+      +R++ M++KQ  + R  D  +    I +AC DV+LS RLKK+L  IL++GNQLN+G+   GFTLDSLLKL +AKAFD+KTS+L Y++ L  RND   L F +
Sbjct:  179 EQYMKVMLGFKSAPKRIRAMIFKQTYRIRINDCATKLTKIENACDDVKLSGRLKKVLKTILRVGNQLNDGEKHEGFTLDSLLKLQSAKAFDRKTSVLQYVITLISRNDADCLLFPE 294
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A7S2RT10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RT10_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.850e-20
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQT----TGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            +++M+ M+ V     +   ++++    +R ++       ++ AC DVR S+RL+KL+  IL L NQ+N G T     GFT+D+LLKLN AKAFDKKTS+L YLV L ++ND  LL F++
Sbjct:   13 EKYMVAMMDVQNASAKFDCLIFQTQFDSRFQETMEQISTLSKACHDVRTSKRLRKLMATILTLVNQINTGGTGNLAAGFTIDALLKLNEAKAFDKKTSVLQYLVQLVKQNDEKLLKFRE 131
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A448ZA09_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA09_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.070e-19
Identity = 51/118 (43.22%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEGQ----TTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFK 342
            +++M+ +++VP  E +L  M ++   + R  DM +   ++N AC  +R S + +KL+ +IL + NQ+N G       GFTLD+LLKLN AKAFDKKTS+LHY+V L ++ND +LL F+
Sbjct: 1804 EKYMVTLMEVPDAEAKLHTMEFRNGFKTRFADMTASVRILNRACEQLRSSEKFRKLMAVILTVVNQINTGGEGNLAMGFTLDALLKLNEAKAFDKKTSVLHYVVKLVKKNDESLLCFE 1921
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A7S4MH99_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MH99_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.390e-19
Identity = 53/121 (43.80%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLN------EGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FM+ M+ V   +++L+ +L+K    +  +++   A  I  AC ++  S RL+KLLGI+L +GN+LN      +G+   FTLDSLLKLN AKAFDKKT+ LHY+V++ +RN+  L+ FKD
Sbjct:  292 EKFMVAMMTVRHSKRKLRALLFKLQFASCLQELEQEATTIERACDELSNSVRLRKLLGIVLNIGNRLNTAGSRAKGKAGAFTLDSLLKLNQAKAFDKKTTFLHYVVLVVQRNNELLIRFKD 412
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Match: A0A7S2XPA2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPA2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.850e-19
Identity = 51/121 (42.15%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 QQFMLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLN------EGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 345
            ++FM+ M+ V   + +++ +L+K   ++  +D+ S    +  +C ++  S RL+KLLGI+L +GN+LN      +G+   FTLDSLLKLN AKAFDKKT+ LHY+V++ +RN+  L+ FKD
Sbjct:   56 EKFMVAMMTVKHSKNKIRALLFKLQFESCMKDLMSDTTTVEKSCDELSNSIRLRKLLGIVLNVGNRLNTAGPSEKGKAGAFTLDSLLKLNQAKAFDKKTTFLHYVVLVVQRNNELLVRFKD 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15077.3818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE2.510e-5994.78FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI4.640e-5994.78Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836C9A0_9STRA4.010e-4069.57FH2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A812WW85_SYMMI1.290e-2053.13Daam2 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1XVY3_9STRA1.530e-2042.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HTK0_9STRA1.980e-2047.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RT10_9STRA4.850e-2042.02Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A448ZA09_9STRA1.070e-1943.22Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4MH99_9STRA1.390e-1943.80Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2XPA2_9STRA1.850e-1942.15Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15077contigH-canaliculatus_F_contig15077:1502..2059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.7
Seed ortholog evalue3.7e-49
Seed eggNOG ortholog2880.D8LT97
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15077.3818.1prot_H-canaliculatus_F_contig15077.3818.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15077 1511..2059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.6024456-UTR-H-canaliculatus_F_contig15077:1501..15101622929249.6024456-UTR-H-canaliculatus_F_contig15077:1501..1510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15077 1502..1510 +
1696845735.709929-UTR-H-canaliculatus_F_contig15077:1501..15101696845735.709929-UTR-H-canaliculatus_F_contig15077:1501..1510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15077 1502..1510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.615222-CDS-H-canaliculatus_F_contig15077:1510..17081622929249.615222-CDS-H-canaliculatus_F_contig15077:1510..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15077 1511..1708 +
1696845735.720489-CDS-H-canaliculatus_F_contig15077:1510..17081696845735.720489-CDS-H-canaliculatus_F_contig15077:1510..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15077 1511..1708 +
1622929249.631555-CDS-H-canaliculatus_F_contig15077:1915..20591622929249.631555-CDS-H-canaliculatus_F_contig15077:1915..2059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15077 1916..2059 +
1696845735.728856-CDS-H-canaliculatus_F_contig15077:1915..20591696845735.728856-CDS-H-canaliculatus_F_contig15077:1915..2059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15077 1916..2059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15077.3818.1

>prot_H-canaliculatus_F_contig15077.3818.1 ID=prot_H-canaliculatus_F_contig15077.3818.1|Name=mRNA_H-canaliculatus_F_contig15077.3818.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MLEMIKVPKREQRLQGMLYKQLLQARQEDMRSMAGLINSACLDVRLSRRL
KKLLGIILKLGNQLNEGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLA
RRNDPTLLDFKDVS
back to top

mRNA from alignment at H-canaliculatus_F_contig15077:1502..2059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15077.3818.1 ID=mRNA_H-canaliculatus_F_contig15077.3818.1|Name=mRNA_H-canaliculatus_F_contig15077.3818.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15077:1502..2059+ (Hapterophycus canaliculatus Oshoro5f female)
CAACAGTTCATGCTCGAGATGATCAAGGTGCCGAAGCGCGAGCAGCGCTT
GCAGGGCATGCTCTACAAGCAGCTGCTGCAGGCGAGGCAGGAGGATATGC
GCTCCATGGCGGGGCTGATCAACTCGGCGTGCCTGGACGTGCGGCTGAGC
CGGCGGCTCAAGAAGCTCCTGGGAATCATCCTCAAGCTCGGGAACCAGCT
CAACGAGGTGTGTTGCCGCTCTTGTCGGTGCCTACCGCCGCCGCCGCTAC
CGCTCCTGCTGACAACCACTCACTGGTGCTGGTGCTGGCTAATAATGGTA
CCGCGTTTCCTGGCGTTGTGGGTGGCGACTGCCGTGTCGTCCAGCACCGA
CCCCTGTTTTTCCTCTCCGCTTCGGCACGCCGTACGACCCCGCGTGCTCC
TTTGCGGCGCGCAGGGCCAGACCACGGGGTTCACGCTAGACTCGCTCCTG
AAGCTCAACACGGCCAAGGCCTTCGACAAGAAGACGAGCATCCTGCACTA
CCTCGTGATGCTCGCGCGAAGAAACGACCCGACTCTCCTCGACTTCAAAG
ACGTGAGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15077:1502..2059+

>mRNA_H-canaliculatus_F_contig15077.3818.1 ID=mRNA_H-canaliculatus_F_contig15077.3818.1|Name=mRNA_H-canaliculatus_F_contig15077.3818.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15077:1502..2059+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCGAGATGATCAAGGTGCCGAAGCGCGAGCAGCGCTTGCAGGGCAT
GCTCTACAAGCAGCTGCTGCAGGCGAGGCAGGAGGATATGCGCTCCATGG
CGGGGCTGATCAACTCGGCGTGCCTGGACGTGCGGCTGAGCCGGCGGCTC
AAGAAGCTCCTGGGAATCATCCTCAAGCTCGGGAACCAGCTCAACGAGAT
GCTCGAGATGATCAAGGTGCCGAAGCGCGAGCAGCGCTTGCAGGGCATGC
TCTACAAGCAGCTGCTGCAGGCGAGGCAGGAGGATATGCGCTCCATGGCG
GGGCTGATCAACTCGGCGTGCCTGGACGTGCGGCTGAGCCGGCGGCTCAA
GAAGCTCCTGGGAATCATCCTCAAGCTCGGGAACCAGCTCAACGAGGGCC
AGACCACGGGGTTCACGCTAGACTCGCTCCTGAAGCTCAACACGGCCAAG
GCCTTCGACAAGAAGACGAGCATCCTGCACTACCTCGTGATGCTCGCGCG
AAGAAACGACCCGACTCTCCTCGACTTCAAAGACGTGAGCGGCCAGACCA
CGGGGTTCACGCTAGACTCGCTCCTGAAGCTCAACACGGCCAAGGCCTTC
GACAAGAAGACGAGCATCCTGCACTACCTCGTGATGCTCGCGCGAAGAAA
CGACCCGACTCTCCTCGACTTCAAAGACGTGAGC
back to top