mRNA_H-canaliculatus_F_contig15070.3816.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15070.3816.1
Unique NamemRNA_H-canaliculatus_F_contig15070.3816.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15070.3816.1 vs. uniprot
Match: D7G1U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.530e-43
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:   10 PSPLPKALVIDELHTLEVFRKQGLATSLTNFVKGIAEAHGIGLYARCEVYTRTFWELRGFEEETIPEVVRACGLEGEDDLVMAPAATLMRAGPAYTEYQPANGERLSM 333
            P   P A +IDELHTLEVFRKQGLATSLTNFVKGIAEAHG+ L+   E+Y R+FWELRGFEEET PEV+RAC L+ +D      A TL+RAG AYTEYQPAN ERLSM
Sbjct:   34 PLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGFKTGAATTLLRAGAAYTEYQPANDERLSM 141
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BLAST of mRNA_H-canaliculatus_F_contig15070.3816.1 vs. uniprot
Match: A0A6H5JC87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC87_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.690e-41
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:   10 PSPLPKALVIDELHTLEVFRKQGLATSLTNFVKGIAEAHGIGLYARCEVYTRTFWELRGFEEETIPEVVRACGLEGEDDLVMAPAATLMRAGPAYTEYQPANGERLSM 333
            P   P A +IDELHTLEVFRKQGLATSLTNFVKGIAEAHG+ L+   E+Y R+FWELRGFEEET PEV+RAC L+ +D      + TL+RAG AYTEYQPAN ERLS+
Sbjct:   88 PLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACNLDLDDGSNTGASTTLLRAGAAYTEYQPANDERLSI 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15070.3816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1U4_ECTSI5.530e-4371.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC87_9PHAE5.690e-4169.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15070contigH-canaliculatus_F_contig15070:86..1870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size336
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15070.3816.1prot_H-canaliculatus_F_contig15070.3816.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15070 86..1870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.4618628-CDS-H-canaliculatus_F_contig15070:85..1451622929249.4618628-CDS-H-canaliculatus_F_contig15070:85..145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 86..145 +
1696845735.6222892-CDS-H-canaliculatus_F_contig15070:85..1451696845735.6222892-CDS-H-canaliculatus_F_contig15070:85..145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 86..145 +
1622929249.4751825-CDS-H-canaliculatus_F_contig15070:910..10061622929249.4751825-CDS-H-canaliculatus_F_contig15070:910..1006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 911..1006 +
1696845735.6377573-CDS-H-canaliculatus_F_contig15070:910..10061696845735.6377573-CDS-H-canaliculatus_F_contig15070:910..1006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 911..1006 +
1622929249.4883664-CDS-H-canaliculatus_F_contig15070:1690..18701622929249.4883664-CDS-H-canaliculatus_F_contig15070:1690..1870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 1691..1870 +
1696845735.654463-CDS-H-canaliculatus_F_contig15070:1690..18701696845735.654463-CDS-H-canaliculatus_F_contig15070:1690..1870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15070 1691..1870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15070.3816.1

>prot_H-canaliculatus_F_contig15070.3816.1 ID=prot_H-canaliculatus_F_contig15070.3816.1|Name=mRNA_H-canaliculatus_F_contig15070.3816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
LPHPSPLPKALVIDELHTLEVFRKQGLATSLTNFVKGIAEAHGIGLYARC
EVYTRTFWELRGFEEETIPEVVRACGLEGEDDLVMAPAATLMRAGPAYTE
YQPANGERLSM*
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mRNA from alignment at H-canaliculatus_F_contig15070:86..1870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15070.3816.1 ID=mRNA_H-canaliculatus_F_contig15070.3816.1|Name=mRNA_H-canaliculatus_F_contig15070.3816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15070:86..1870+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCCCCACCCGTCCCCGCTACCGAAGGCGCTCGTCATCGACGAGCTGCA
CACGTTGGAGGTGAGGTTCGCGTCCTTGGAGCATCTCGTAGGCCACGCTT
GTCCGCCCCCGTTTGAGGTTCGCTACCCCGATGACGAGCCTTGTCGGCCA
ACAGGGTCCACAAGTGCTTGCGCACCGTTGGCCGACAGGCGCGTGCGCGC
CCACCACCACTGTCATGCCTTCGTAATTACTTTCTTGGCTGCTTGCTCGC
TGTAGTCGCTCTATTCTTGAGTTAGGGCGGGGGAGCGCGTTGTCGAAGCT
GGAACCGCCGCCGCGTGCAGATAGATGCCCAGAGGGTACAGTCCATTTTT
TGCGGCGCTCGTTGTCGGGCCGCCTTTTCCGGAAGGAAGGGTGTGGACCG
ACGCCTTTGCTATCTGTGCCACGAAAAATGAACGAAGGCACGAGGCGTGA
CGTCGGCGCCTATAGCAGCCTGCACCGTGTTGCCCTGTTCTCACGCGGGG
CTTGAGGGCCGCGAGTGTTTTCGTCCGTGCCCACTGCCGGCCTTTCCGAA
TCGCCGGGGCACCTCCTCCAGCTACGTGTGGCAGAATCTTCCGCCCCTAC
CCCCCCCCCTCCCCGAACCAGCGCCGCCGCCGCCGTGCCCCTTCTTGGTG
CTGTGTAGTCCCGCATCGCAAACACCGACCGCCACATTTTCTTGGGTTTG
TGCCCCTTTGGTCCGTTGCTCGGATGGAACTTTTCTAGGGATCCCTGACG
ACAACGTTTTCGCGACTCGCCGCACGATGCGTTGTAGACACACATTTTGT
TGCCGGCTCGTCGTTTGGTGCGCAGGTGTTTCGCAAGCAGGGGCTCGCCA
CGAGCTTGACCAACTTCGTGAAGGGCATCGCCGAGGCTCACGGGATCGGA
CTCTACGCGCGCTGCGAAGTGGTGAGTCGGCGAAGGGTATGCGCCGGAGA
GGAGAGTCGTCGGGGGTATATTGTTAGAGGGCTAGGCGGCGCTCCCTCGA
TGGTTCGCTCTGCTGCTGCTGCTGCTGTTGGGTTTGTTTTGAGCGCTGGC
CGAGGACGCGTTCCTCCTTCCCAGAAAAAAATGGGCAATAATTGCTGGAA
ACACCGCCACCCCTGTTTCTACCCGGGAGATTTTCCCAAGCGTGCAGAAG
AGTGGGGTTTGGAGAGGGGGGAGGGGAGGGGTGGGGGCGAGAAGAAGAAG
GAGCCACCCCGCAAACCGCCGCTGCTGGAGCTGCTGCCGCTCAGCGTGTT
TCCTGGAGCTCAGCATCGCTTGCCCCTCCCCGGAACCCGCCATCGCCTTT
TTCTCGCTCTCACCCCGGACGACAGTGTCGCTTGACAGCCCCGGTGGTGT
GATGCTCCCCTTTTCTCACCAATAATCCAGGTTCCTCGCCAGCTGTCCCG
CCTCCACCCCTCTCTTGTCTTGTGCCTATTATACGCTTATGCCACGTGGT
TTTGTTGCCCTTCCCTTTCCCTCCCCGCTCTTGATGCCCCCTCCCCCCCT
CCCCCCCCTCGCCCTCGGGCTGTCGATTTTACCCTTGTCGACCCCACCCC
CCTAATCCAACGTGTGATGATCCGCCCCATTCCTCTCTCTCGCTCTCTCG
GGCAGTACACCCGCACATTCTGGGAGCTGAGGGGCTTCGAGGAGGAGACG
ATACCGGAAGTGGTGAGAGCGTGCGGTCTGGAGGGGGAGGACGATTTGGT
GATGGCCCCCGCCGCGACGCTCATGCGGGCGGGGCCGGCCTACACGGAGT
ACCAGCCGGCGAACGGGGAGCGTCTGAGCATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15070:86..1870+

>mRNA_H-canaliculatus_F_contig15070.3816.1 ID=mRNA_H-canaliculatus_F_contig15070.3816.1|Name=mRNA_H-canaliculatus_F_contig15070.3816.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15070:86..1870+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCCCCACCCGTCCCCGCTACCGAAGGCGCTCGTCATCGACGAGCTGCA
CACGTTGGAGCTTCCCCACCCGTCCCCGCTACCGAAGGCGCTCGTCATCG
ACGAGCTGCACACGTTGGAGGTGTTTCGCAAGCAGGGGCTCGCCACGAGC
TTGACCAACTTCGTGAAGGGCATCGCCGAGGCTCACGGGATCGGACTCTA
CGCGCGCTGCGAAGTGGTGTTTCGCAAGCAGGGGCTCGCCACGAGCTTGA
CCAACTTCGTGAAGGGCATCGCCGAGGCTCACGGGATCGGACTCTACGCG
CGCTGCGAAGTGTACACCCGCACATTCTGGGAGCTGAGGGGCTTCGAGGA
GGAGACGATACCGGAAGTGGTGAGAGCGTGCGGTCTGGAGGGGGAGGACG
ATTTGGTGATGGCCCCCGCCGCGACGCTCATGCGGGCGGGGCCGGCCTAC
ACGGAGTACCAGCCGGCGAACGGGGAGCGTCTGAGCATGTGATACACCCG
CACATTCTGGGAGCTGAGGGGCTTCGAGGAGGAGACGATACCGGAAGTGG
TGAGAGCGTGCGGTCTGGAGGGGGAGGACGATTTGGTGATGGCCCCCGCC
GCGACGCTCATGCGGGCGGGGCCGGCCTACACGGAGTACCAGCCGGCGAA
CGGGGAGCGTCTGAGCATGTGA
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