mRNA_H-canaliculatus_F_contig1507.3815.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1507.3815.1
Unique NamemRNA_H-canaliculatus_F_contig1507.3815.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: D8LR85_ECTSI (Protein translocase subunit SecA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR85_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 4.790e-118
Identity = 195/221 (88.24%), Postives = 211/221 (95.48%), Query Frame = 1 
Query:    1 QVSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKPVLSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTAA 663
            QVSATLDKVQ+ATE+YFAGIRRTVFSFDEVMN+QRLALYRARDDVI+KE++ LRELALEY+AKTCTEIVQGNSA DG PK VLS+KL+QFFP  DASALSAESLT A++ GGKDGLL+HAL+QAAAAT+KKLSDIEAV+ GLSSES RFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKT+A
Sbjct:  710 QVSATLDKVQIATEDYFAGIRRTVFSFDEVMNDQRLALYRARDDVIDKEREELRELALEYSAKTCTEIVQGNSASDGTPKAVLSDKLRQFFPLGDASALSAESLTAAYSKGGKDGLLQHALDQAAAATEKKLSDIEAVRAGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTSA 930
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A6H5KYN9_9PHAE (SecA_SW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.360e-45
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:  412 VKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTA 660
            V+ GLSSES RFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTA
Sbjct:   11 VRTGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTA 93
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A835ZJ09_9STRA (Protein translocase subunit SecA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ09_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.820e-42
Identity = 111/258 (43.02%), Postives = 140/258 (54.26%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKPVLSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDK-KLSDIEAVKDGLSSESTRFLTLTQMDDLW-------------------------------------CQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTAA 663
            VS TL +VQ A E+YFA IRR+VF +DEV+N QR ALYR R   +         L L+Y A+T  +IV  N  G  A    L+ K++QFFP A A  L+ E L       G DG ++   E AAAA  + K  +++ V+ G   E+ R+LTLTQ+DDLW                                     C HL+ MNLLKESVSMEVFRG +PL+EF  QG+E+F DLL   RRN VYSL +YNP P   A
Sbjct:  765 VSETLGRVQQAAEDYFASIRRSVFDYDEVLNAQRNALYRTRGAFLRAPPADADALVLKYCAETVADIVP-NFLGAKADPAGLAAKMRQFFPTAPAEMLAEEKLK------GGDGAVRAQCEAAAAAAWRAKRDELDQVRPGPGLETARYLTLTQLDDLWIKSSYIPSTSTPPPQXXXXXXXXXXXXXXXXXXXXXXCDHLDRMNLLKESVSMEVFRGNDPLQEFKDQGRELFKDLLATARRNAVYSLFIYNPRPAAEA 1015
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A6U4GUK1_9STRA (Protein translocase subunit SecA n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GUK1_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.860e-35
Identity = 95/221 (42.99%), Postives = 127/221 (57.47%), Query Frame = 1 
Query:    1 QVSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKPVLSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGR-NPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTA 660
            QVS  LD+VQ   EEYFAGIRR V  FD V+  QR  LY  R  ++  + D ++    ++   T TEI + N A D A     ++ LK +FP      +S E L    A G K GL   A E A  A D K + +E  +  L+  + R+L LTQ D+LW + L  MNLLKE+V M  ++G  +PL+E+  +G ++F DLLDNVRRNTVYSL +Y P P  A
Sbjct:  729 QVSKALDRVQQGAEEYFAGIRRQVSEFDGVLQGQREQLYDTRRGLLESDADAVKSRVGKWFTDTATEIAEAN-AEDAAK---AAKVLKAYFP---VVKVSEEDLEGYVAKGDKAGLKARATEIATTALDAKWAALEKHRAELAGSAARYLALTQADNLWAEQLTRMNLLKEAVIMRKYQGGVDPLDEYRVEGGKLFDDLLDNVRRNTVYSLMVYQPGPADA 942
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A7S1TFT3_9RHOD (Protein translocase subunit SecA n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFT3_9RHOD)

HSP 1 Score: 130 bits (326), Expect = 1.620e-27
Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKPV------LSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMY 639
            V+ ++D++Q   E+Y+ GIRR +F FDEVMN QR+ +YR R   +N   D L++L  E   KT ++IV  +S+G    KPV      L  KL  FFP    S L A +        G D + +  ++Q   +   K SD++  + GL+ E  R+L L Q+D LW  H+  M+LLK++VS   + G  PL+ +  +G  +F ++    RRNTVYS   Y
Sbjct:  744 VAGSVDRIQEQVEDYYRGIRRRLFEFDEVMNVQRVIVYRRRSTWLNCSDDELKDLVSEMCVKTGSDIV--SSSGK---KPVKERVGFLVTKLSAFFPGILLSELEAGN--------GLDRVAEVVMKQVNESVLAKFSDLDENRVGLAVEVARYLALVQLDSLWVNHIRTMDLLKDAVSFRNYGGERPLDAYRTEGDRLFSEMEAVCRRNTVYSFFQY 948
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A6T8PR52_HEMAN (Protein translocase subunit SecA n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PR52_HEMAN)

HSP 1 Score: 129 bits (325), Expect = 1.920e-27
Identity = 84/220 (38.18%), Postives = 123/220 (55.91%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPK-PVLSEKLKQFFPQADASALSAESLTKAFADGG-KDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKT 657
            V+ +LDKVQ   EEYF GIR+ +F +DE++  QR ALY  R +++  +++ + +   EY  +T  EI   N  G   P    L  K+KQFF       +  +  T A  D   K   LK    QA     +K   ++AVKD  + E  R+LTLTQ+D+LW QHL++M+ LK+ V +  ++  +P EE+  +G E+F D+L  VRRNTVYS   Y    +T
Sbjct:  634 VADSLDKVQQGVEEYFYGIRKEMFKYDEIVATQREALYTLRRNLVLADENDMSDSLEEYCLETVGEIAP-NYLGKADPDLQGLMAKVKQFF-----EGIELDEATLAQGDDATKVAYLK---TQARECLLRKEGGLDAVKDHFAFEIERYLTLTQVDNLWKQHLKDMDYLKQFVGLRSYKQIDPFEEYQQEGYELFQDMLAAVRRNTVYSFFQYKLQDET 844
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: SECA_SYNJA (Protein translocase subunit SecA n=7 Tax=Synechococcus TaxID=1129 RepID=SECA_SYNJA)

HSP 1 Score: 128 bits (322), Expect = 5.040e-27
Identity = 75/218 (34.40%), Postives = 127/218 (58.26%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKP----VLSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNP 645
            +S++L+  Q   E Y+  +R+ VF +DEVMN QR A+Y  R  ++  E + L+   L+Y  KT  EIV+ +   +  P+      L+ K+++F P    + L A+ L     D     +L H ++QA  A + K + ++  + GL  ++ RF  L Q+D LW +HL+ M  L+E+V +  +  R+PL E+  +G E+FL+++DN+RRNTVY+L ++ P
Sbjct:  710 LSSSLENAQRKVEVYYFDLRKQVFEYDEVMNNQRRAIYSERRRIL--EGENLKPKILDYMRKTVEEIVRAHVNPELPPEEWEIDKLTAKMQEFVPLLKEN-LKADDLR----DLSYQEILDHLIKQAELAYEAKEAFLDTFEPGLMRKAERFFLLQQVDTLWREHLQQMEALREAVGLRGYGQRDPLIEYKNEGYELFLEMMDNIRRNTVYNLFVFTP 920
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A2V3INJ2_9FLOR (Protein translocase subunit SecA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ2_9FLOR)

HSP 1 Score: 128 bits (321), Expect = 6.390e-27
Identity = 80/221 (36.20%), Postives = 117/221 (52.94%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQG----NSAGDGAPKPVLSEKLKQFF---PQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNP 645
            V+ TL++ Q   E YF  IR  +F +D+V + QR   Y  R  ++    +GLR+  L+   KT  EIV G        D   K  LSEKL QFF   P    S L   S TK + +   +  L+           +K ++++A K G + E  RFL LTQMD+LW +H++ ++ LKE + +  + G +PL  +  +G E+F D+LDNVRRN V+S   Y P
Sbjct:  706 VNRTLNEAQKNVEAYFREIREQLFKYDQVFSRQREVFYVQRRKLVTATYEGLRDRFLDDCIKTGLEIVDGYVGRRDEEDDFEK--LSEKLLQFFSGMPDIGESNLKQASDTKKYLNESMEAFLQ-----------QKQAELDARKTGFAGEVLRFLWLTQMDNLWLEHMKRLDYLKEFIVLRSYEGEDPLGAYQKEGFELFTDMLDNVRRNNVFSFFQYLP 913
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: A0A383W2A5_TETOB (SecA_SW domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W2A5_TETOB)

HSP 1 Score: 120 bits (302), Expect = 9.050e-27
Identity = 67/218 (30.73%), Postives = 120/218 (55.05%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQGNSAGDGAPKP----VLSEKLKQFFPQADASALSAESLTKAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNP 645
            +S  LD  Q   E YF  IR+ +F +D+V+N QR  +Y  R   +    D LR   +EYA +TC +I++ N      P       L+ K+ Q+ P      L+ + L +  + G  +GL  +  + A AA ++K + ++ ++ GL  E+ +F  LTQ D+LW +HL+ +  L+++V +  +  ++PL EF  +G  +FL+ +  +RRN +Y++ ++ P
Sbjct:   36 LSDALDTAQKRVESYFYDIRKNLFDYDQVVNTQRDRVYAERRRALLS--DSLRPAMIEYAERTCDDILEANVDKTADPAEWRLDALAAKVVQYCPL--LQGLTGQELLQQ-SGGSFEGLRSYLRQLAVAAYEQKAAAVDDIEPGLMQEAQKFFVLTQTDNLWKEHLQAIKFLQQAVGLRGYASKDPLTEFKLEGYNLFLETMAQIRRNVIYNVYVFQP 248
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BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Match: UPI0018821646 (preprotein translocase subunit SecA n=1 Tax=Nostoc edaphicum TaxID=264686 RepID=UPI0018821646)

HSP 1 Score: 125 bits (314), Expect = 2.210e-26
Identity = 82/229 (35.81%), Postives = 126/229 (55.02%), Query Frame = 1 
Query:    4 VSATLDKVQMATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEYAAKTCTEIVQG----NSAGDGAPKPVLSEKLKQF-FPQADASALSAESLT----KAFADGGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSLQMYNPSPKTAA 663
            ++ +L+  Q   E Y+  IR+ VF +DEVMN QR A+Y  R  V+  E   L+E  ++YA KT  +IV      +   +      L EK+K+F +  AD  A   E +T    KAF             EQ   A D K + I+ V+ GL  ++ RF  L ++D LW +HL+ M+ L+ESV +  +  ++PL E+ ++G E+FLD++ N+RR+ VYSL M+ P P+  A
Sbjct:  407 LTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVL--EGQDLKEQVIKYAEKTMDDIVDYYINIDLPSEEWELEKLVEKVKEFVYLLADLQASQLEDITVSEIKAFLH-----------EQVRIAYDLKEAQIDQVQPGLMRQAERFFILQRIDTLWREHLQQMDALRESVGLRGYGQKDPLIEYKSEGYELFLDMMVNIRRDVVYSLFMFQPQPQQMA 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1507.3815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR85_ECTSI4.790e-11888.24Protein translocase subunit SecA n=1 Tax=Ectocarpu... [more]
A0A6H5KYN9_9PHAE4.360e-4596.39SecA_SW domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZJ09_9STRA1.820e-4243.02Protein translocase subunit SecA n=1 Tax=Tribonema... [more]
A0A6U4GUK1_9STRA1.860e-3542.99Protein translocase subunit SecA n=1 Tax=Phaeomona... [more]
A0A7S1TFT3_9RHOD1.620e-2736.70Protein translocase subunit SecA n=1 Tax=Compsopog... [more]
A0A6T8PR52_HEMAN1.920e-2738.18Protein translocase subunit SecA n=1 Tax=Hemiselmi... [more]
SECA_SYNJA5.040e-2734.40Protein translocase subunit SecA n=7 Tax=Synechoco... [more]
A0A2V3INJ2_9FLOR6.390e-2736.20Protein translocase subunit SecA n=1 Tax=Gracilari... [more]
A0A383W2A5_TETOB9.050e-2730.73SecA_SW domain-containing protein n=1 Tax=Tetrades... [more]
UPI00188216462.210e-2635.81preprotein translocase subunit SecA n=1 Tax=Nostoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1507contigH-canaliculatus_F_contig1507:21789..26194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.8
Seed ortholog evalue8.8e-100
Seed eggNOG ortholog2880.D8LR85
Preferred namesecA
KEGG koko:K03070
KEGG TC3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
EggNOG free text desc.ATPase-coupled protein transmembrane transporter activity
EggNOG OGs2QS7I@2759,COG0653@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpreprotein translocase subunit SecA
Ec32 orthologEc-06_003500.1
Exons5
Model size2038
Cds size645
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.3305366-UTR-H-canaliculatus_F_contig1507:21788..231511622929249.3305366-UTR-H-canaliculatus_F_contig1507:21788..23151Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1507 21789..23151 -
1696845735.5436904-UTR-H-canaliculatus_F_contig1507:21788..231511696845735.5436904-UTR-H-canaliculatus_F_contig1507:21788..23151Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1507 21789..23151 -
1622929249.4183893-UTR-H-canaliculatus_F_contig1507:26164..261941622929249.4183893-UTR-H-canaliculatus_F_contig1507:26164..26194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1507 26165..26194 -
1696845735.6096506-UTR-H-canaliculatus_F_contig1507:26164..261941696845735.6096506-UTR-H-canaliculatus_F_contig1507:26164..26194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1507 26165..26194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.345842-CDS-H-canaliculatus_F_contig1507:23151..232561622929249.345842-CDS-H-canaliculatus_F_contig1507:23151..23256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 23152..23256 -
1696845735.5613568-CDS-H-canaliculatus_F_contig1507:23151..232561696845735.5613568-CDS-H-canaliculatus_F_contig1507:23151..23256Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 23152..23256 -
1622929249.3615289-CDS-H-canaliculatus_F_contig1507:23809..239861622929249.3615289-CDS-H-canaliculatus_F_contig1507:23809..23986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 23810..23986 -
1696845735.5704548-CDS-H-canaliculatus_F_contig1507:23809..239861696845735.5704548-CDS-H-canaliculatus_F_contig1507:23809..23986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 23810..23986 -
1622929249.3757029-CDS-H-canaliculatus_F_contig1507:24543..247241622929249.3757029-CDS-H-canaliculatus_F_contig1507:24543..24724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 24544..24724 -
1696845735.5798023-CDS-H-canaliculatus_F_contig1507:24543..247241696845735.5798023-CDS-H-canaliculatus_F_contig1507:24543..24724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 24544..24724 -
1622929249.3884716-CDS-H-canaliculatus_F_contig1507:25390..255151622929249.3884716-CDS-H-canaliculatus_F_contig1507:25390..25515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 25391..25515 -
1696845735.589337-CDS-H-canaliculatus_F_contig1507:25390..255151696845735.589337-CDS-H-canaliculatus_F_contig1507:25390..25515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 25391..25515 -
1622929249.4031737-CDS-H-canaliculatus_F_contig1507:26107..261641622929249.4031737-CDS-H-canaliculatus_F_contig1507:26107..26164Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 26108..26164 -
1696845735.6001036-CDS-H-canaliculatus_F_contig1507:26107..261641696845735.6001036-CDS-H-canaliculatus_F_contig1507:26107..26164Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1507 26108..26164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1507.3815.1prot_H-canaliculatus_F_contig1507.3815.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1507 23152..26164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1507.3815.1

>prot_H-canaliculatus_F_contig1507.3815.1 ID=prot_H-canaliculatus_F_contig1507.3815.1|Name=mRNA_H-canaliculatus_F_contig1507.3815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=215bp
MATEEYFAGIRRTVFSFDEVMNEQRLALYRARDDVINKEQDGLRELALEY
AAKTCTEIVQGNSAGDGAPKPVLSEKLKQFFPQADASALSAESLTKAFAD
GGKDGLLKHALEQAAAATDKKLSDIEAVKDGLSSESTRFLTLTQMDDLWC
QHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMFLDLLDNVRRNTVYSL
QMYNPSPKTAATGP*
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mRNA from alignment at H-canaliculatus_F_contig1507:21789..26194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1507.3815.1 ID=mRNA_H-canaliculatus_F_contig1507.3815.1|Name=mRNA_H-canaliculatus_F_contig1507.3815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1507:21789..26194- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTTCCGCTACCCTGGACAAGGTTCAGATGGCCACCGAGGAATACTT
CGCGGGTATCCGAAGAACGGTGTTTTCTTTCGACGAGGTACGTCCCCGTG
TCCTCCCGTCCCTACGGGTGATGGCGTCCCGCACAGGAATGCCCCCGAAG
GAAGGACTCGCGTTCCCAGCCACTCCCTAGCTGTCCGTCGAAGAGCGGGG
ATGGGTTAGGAAACGGGCAACGTGGCGGAGAGATAGAGGCCGCTCGTATG
TGCGTCCGATGGTTTGTGCCGACGACAAAAAATTAGACCAGTTCGGGAGG
CTGGAGGTGGTGCTGATTTGTCTGGCCCGGGGTTGTAAGGAAGAGGCATC
GGACGGGATGGCATGGCTCGCTTGGTCGAAGTCTTCCGGGGCTTGCTTCT
TTGCCTCAGGGTTTGGCGTGCTGGGCACGAGAGGCCCCGCGATGCAAAAG
GGAAGCGCTTGCTTGTTGCTCGATGCCTCATCGACTGGTCATTTTATTTG
GCCGGGCCGCCTCGGAATCGACCTGCTCTCTTGTAGCTGAACGACTTGCT
CAGTCGCTGAATCTACCGACGTCCTGATGTAACGGTCTCTTCCTTTTCTT
TGAAAATAAAAAAATCGGCCACACAGGGAGAGCGAACACCCTCCTACACA
CTCGCGTTACCGTTTACCCCTGCGTGCAGGTGATGAACGAGCAGAGGCTG
GCGCTGTACCGAGCGCGAGACGACGTGATCAACAAGGAGCAGGACGGGCT
GAGGGAACTGGCGCTGGAGTACGCCGCCAAGACTTGTACGGAGATCGTGC
AGGGGTGCGTTGCTGCTGTCGCCTTCGTGGGTGCTCTAGCTTCTTAAGCC
TTCGTATTTGGTGCTGTTCCTGTCGTTGCCAGTGGTGGTGGCCGCGTAAT
CGCCGTCGTTGTTGCTGCTGTGGCCGTCGCGGCTGTGCCTGTTAGGCGCT
ATAAACGTGACAGGCAGTGCTGCCGCCTACCACTATGTCATATCGTGGGG
ACAGCATCCGCATTGCCGATTTACCTGGGTCGCCTAAGGTGACTGTGTTG
GACTCCGCCGAGGGGGGGCACGTAAAATGCGCTCTTCTACAAACAGCGAC
TACCAGTGGCCGAGAAGAGATCATCGATCAAAAGTTGAGACATGGCAACA
GCAACAAGGCGACGGAAGAGCCGGCTTTCGTGGAAGAACGAGCTACGTGG
ACGGATGGAAGTCGGAGAGAGAGGGGGTCGCTCACGACCGTCTCGTTCAT
GCGAGCGCCAACTGCTCTTGCGGATCCTTCGGTCAATTTTTGCTCTCGGA
ACGTGCAACCACCACATCAGCACCCCCCGCACCCCCCCCCAGCCTACAAG
CTCCCTCCGTGTCATCGACCCCGCTCGCGGCAGCATCTTCAGTGCCGTCC
CCTCTTCTGGTAAATCGCTTTCACGTTCCCCATCCCCATCCCCCGTCCTC
TCTCCTCCGCCTCCTGCTAGTAACTCCGCCGGCGACGGAGCCCCCAAGCC
CGTCCTGTCCGAGAAGCTGAAGCAGTTCTTCCCGCAGGCGGACGCCTCCG
CTCTGTCCGCGGAAAGCCTGACGAAGGCGTTCGCCGACGGAGGGAAGGAC
GGGCTCCTGAAGCACGCGTTGGAGCAAGCGGCGGCGGCGACCGACAAGAA
GGTTGGTTGGTTACTTGGTCGGTCGGTTCCGTGCTTGACGCGTTTTTTTT
TTTTCTTCTGGGCCGAGTCGCTCGGCAAGATTCAGACCGGGATCCATCCT
GTCTCTGGAGGGTGGCTGTTGCTCGCTCGCTCGTGTTGGCGGTCGCGTTG
GCGTTGCTGCTGCTGTTTTTTTAGCCGTTTTCCCGAGTGTTTTTGGTTTC
GCTCTTATCGTCGCTTGTGTTGTTCTGCTTGTGCGCTGGGGCCAGCCTCC
GTCTTAGAAGCCTCCACCCCCGCGCGCTCTCCAGCGTATCCTGTTCTGTC
TGTGCGTGTGGCACCGGTGAGCGTAGCGCGCGTTTGCTTGCTCTCTGCGG
AACGGGTTTTTGCGCTCGGTGTGTCGTGTTGCTGCAGGTATGCTGGCCCT
CTGGCGCACGATCTCGTGCCAAAGTTTGCCAAGAAAACCTCCTTTCCAGC
TTTCTTGCGCAAAATGCCCGCTCCTCCTTCTCCCTCGCCGACTCTTTCTC
ACCTCGACCCCCTCCGTCCCTCCCTGCCTCCGTCCCTCCCTCTTCCCCCC
ATCACCAGCTTTCGGACATCGAAGCGGTGAAGGACGGCCTATCCAGCGAA
TCGACACGGTTCTTGACGCTCACCCAGATGGATGACCTCTGGTGTCAACA
CCTGGAGAACATGAACCTGCTCAAGGAAAGCGTGTCCATGGAGGTGTTCA
GGGGCAGGAACCCCCTGGAAGAGTTTGGGGCGCAGGTGGGACGGAGTGAT
CCAAAATGTTTGTTGCTTTGCTCGATGGGCATAGGGGAATAGGGTGGGGA
CAGGCGATAGGAAATCCTGCGCAGGAGAGGGCAATCCGCTGTACTTGGTT
GTTACGTTATATTTTGATCCTACTGCAGTTGCTGCTGTTGCTGCTGTTGC
TGCTGTTGCATCTGGTTTGTCTATCGTATTTGCCTACGATGCGGTTGACC
ACGTCGACATGCTCGTCGCAGCAATCATCAAGAAGTCGAAGGACCTTGCT
TCACTGTGCGGCCGTCAAGGGTTTCCATCGTGCAGGATGGCGTACTGCTG
CTCGCGGGAACGGTCCGTCCCTCCCGTTATTTTTTAGCTCTGAACTCCAA
CGAGGGATGGATGCATTAAAAAAAAATTGATTTTTTGAACGGAGGATGAA
GACCTCAAAAAGTGGAGTGTCAGCGCCGCTGGCGCTGGCGAAAGCCTTCG
AAAGCGAAAGCAACAAGAGATCCGGCCCTCTTCTTCTCTCACGCCCCCCC
CCCCCCCCCCCCCCCGTCGCTGCCGACTATTCTTGCAGGGCAAGGAGATG
TTTTTGGACTTGCTGGACAACGTGCGGCGAAACACGGTCTACTCGTTGCA
GATGTACAACCCCAGCCCCAAGACGGCTGCGACTGGGCCATGAGGTGTGG
AAGCCAACGAGGCCGGCTGCAGGAGCCTCCTCGCCACAAAACTAGAAGAA
CCAAGCAGCTGCGACGCCGCAACGACTCCCAAGTCGTCCTCCGAAGTGAC
AGGCGACGACGCACGGGTTGTGCTCACGTGCGCCGCGTACTGCTTGGCGG
AGGGAAACCCTTCACCTCGCCATCTGCGTGTCGCGGGATAGAACGCTGGC
TGCTTGGCACCAGCACCACCAGCACCAGCACCAGCAGAGTGGATTTGCTT
CGGGAGCACTCTCGTTGGGCCTACTTGTAGAGCAGTAGAATAGAGCACTT
GCACCGGTTCCCCGCGGCCATGGGGGCGGCATTCGGCGGCGTGACCCCGA
CATTTCAGCGCCGCGTCAAGAGCAGGAAGAGCGGGATTGCGTTTGGCAGG
GAAGGCCTTCGTACGATATAGATGCTTTCTCCCCGCTTTCGTTCCTCGTG
GTCATCCGCACAGGCAGCTATGTGCCTTGCGGTGAGCACCCCCGGGCTGC
CCGAACGTAAAAAAGTGGGCGTTCATCGATCGAAGTCGGGAATTCCGGGG
GCCAACGGCACTATTCATTTTCCGCCCGTTGAGGGGGTCAGAGACAAATC
TTCCGCACCTGTCTGGTGTGGTCGCGTCTCTGGCGCAAGAGGGCCCCATA
CCTAGCTTCCATACCGGTAGTGGATCAGGGGCCGCTCCGCAAGGGGCTCC
GCCCCTTTACTTCTTGGGCGCCGTCTACGAACGGATCACCTTGAGGTTGC
GTCGAGGTTCTGTCGGTATCCATCGCAGTGACCATGGTGTCGTGCTCGTA
TGCTGAGTGTTCGGCGGAACACCACCCCTGACGGTCTTGACACGCTGGTT
GTGGAGAGTCGCGTGCAGGCTTATCTTGCACTTTTCGGATGTCTTCATGT
CGCAGTAGTGGACGTGTTATGCTTGCTTGGTCACTAGACATGCCTGGCCG
AGTGGTATCTCCTCAGATTGTTTCCGTTCCATCACCGAAAGAAAACCGGG
AATCAGGCCGGTGCGCGCGGCACGCGACGACTGACTGGGGATGCAATTTC
TCCTTGATCTTCCATATAACACATTAACAAGTGGTGCTAATTTTTTGCGC
TCGAGCAACATTTGCGACTTCCGAGAACGGGATAGAGGGAGGCATCGGGA
GCGGCGGATATTGCTCAAACCTGTTTCTCCACGCCACCGAATGAAAGAGA
GAGACATGCTTGTGAAGGCACGCGTGCGCGGGATACGGATAGGTCACGTT
CATCAGGTAGTGTCCAGGTATTCGCGTTTTGCCCCAGCCTTGTACGCTGA
CGGCATTCTGTAAGGGGTGTTCCTACAACATGAAAAAGAGCAGCACTGCT
TTCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1507:21789..26194-

>mRNA_H-canaliculatus_F_contig1507.3815.1 ID=mRNA_H-canaliculatus_F_contig1507.3815.1|Name=mRNA_H-canaliculatus_F_contig1507.3815.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1290bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1507:21789..26194- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCACCGAGGAATACTTCGCGGGTATCCGAAGAACGGTGTTTTCTTT
CGACGAGATGGCCACCGAGGAATACTTCGCGGGTATCCGAAGAACGGTGT
TTTCTTTCGACGAGGTGATGAACGAGCAGAGGCTGGCGCTGTACCGAGCG
CGAGACGACGTGATCAACAAGGAGCAGGACGGGCTGAGGGAACTGGCGCT
GGAGTACGCCGCCAAGACTTGTACGGAGATCGTGCAGGGGTGATGAACGA
GCAGAGGCTGGCGCTGTACCGAGCGCGAGACGACGTGATCAACAAGGAGC
AGGACGGGCTGAGGGAACTGGCGCTGGAGTACGCCGCCAAGACTTGTACG
GAGATCGTGCAGGGTAACTCCGCCGGCGACGGAGCCCCCAAGCCCGTCCT
GTCCGAGAAGCTGAAGCAGTTCTTCCCGCAGGCGGACGCCTCCGCTCTGT
CCGCGGAAAGCCTGACGAAGGCGTTCGCCGACGGAGGGAAGGACGGGCTC
CTGAAGCACGCGTTGGAGCAAGCGGCGGCGGCGACCGACAAGAAGTAACT
CCGCCGGCGACGGAGCCCCCAAGCCCGTCCTGTCCGAGAAGCTGAAGCAG
TTCTTCCCGCAGGCGGACGCCTCCGCTCTGTCCGCGGAAAGCCTGACGAA
GGCGTTCGCCGACGGAGGGAAGGACGGGCTCCTGAAGCACGCGTTGGAGC
AAGCGGCGGCGGCGACCGACAAGAAGCTTTCGGACATCGAAGCGGTGAAG
GACGGCCTATCCAGCGAATCGACACGGTTCTTGACGCTCACCCAGATGGA
TGACCTCTGGTGTCAACACCTGGAGAACATGAACCTGCTCAAGGAAAGCG
TGTCCATGGAGGTGTTCAGGGGCAGGAACCCCCTGGAAGAGTTTGGGGCG
CAGCTTTCGGACATCGAAGCGGTGAAGGACGGCCTATCCAGCGAATCGAC
ACGGTTCTTGACGCTCACCCAGATGGATGACCTCTGGTGTCAACACCTGG
AGAACATGAACCTGCTCAAGGAAAGCGTGTCCATGGAGGTGTTCAGGGGC
AGGAACCCCCTGGAAGAGTTTGGGGCGCAGGGCAAGGAGATGTTTTTGGA
CTTGCTGGACAACGTGCGGCGAAACACGGTCTACTCGTTGCAGATGTACA
ACCCCAGCCCCAAGACGGCTGCGACTGGGCCATGAGGCAAGGAGATGTTT
TTGGACTTGCTGGACAACGTGCGGCGAAACACGGTCTACTCGTTGCAGAT
GTACAACCCCAGCCCCAAGACGGCTGCGACTGGGCCATGA
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