mRNA_H-canaliculatus_F_contig15069.3813.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15069.3813.1
Unique NamemRNA_H-canaliculatus_F_contig15069.3813.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15069.3813.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 3.400e-96
Identity = 141/168 (83.93%), Postives = 150/168 (89.29%), Query Frame = 1 
Query:    1 TRMGQLCFPRRGRH-RGGSLTGTSVDGVAWGGSECMLFAKDGGMTNPHVDVQSVPGGTGKIIHMPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWHPV 501
            TRMG+LCFPRRG H R G LTG S DGVAW GSECMLFAKDGGMTNPHVDVQSVPGGTG IIHMPAAG+IR+VNHAD QGPAKQAIVVHADDMSRVIETL+++TGKES SQY G  +TL EFARVLR  GIRFVV+NFP RCSYALPA+CAH FVTIGLVESSAWHPV
Sbjct:  176 TRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPV 343
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BLAST of mRNA_H-canaliculatus_F_contig15069.3813.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 4.390e-74
Identity = 124/170 (72.94%), Postives = 140/170 (82.35%), Query Frame = 1 
Query:    1 TRMGQLCFPRRGRH-RGGSLTGTSVDGVAWGGSECMLFAKDGGMTNPHVDVQSVPGGTGKIIHMPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKC----AHVFVTIGLVESS-AW 492
            TRMG+LCFPRRG H + G+LTG   DGVAW GSECMLFAKDGGMTNPHVDVQSVPGGTG+IIHMPAAG+IR+VN+ +   PAKQAIVVHADDMSRVIETLK++T KES SQY G  +TLPEFARVL+  GIRFVVMNFP+RCSYALPA+     AH     GL+ S+ AW
Sbjct:  418 TRMGELCFPRRGNHLQYGTLTGKEADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFMRAHELALRGLLHSNDAW 587
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BLAST of mRNA_H-canaliculatus_F_contig15069.3813.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.790e-44
Identity = 90/169 (53.25%), Postives = 116/169 (68.64%), Query Frame = 1 
Query:    1 TRMGQLCFPRRGRHRGGSLTGT-SVDGVAWGGSECMLFA-KDGGMTNPHVDVQSVPGGTGKIIHMPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWHPV 501
            TRMG LC P R   RGG LTGT SV G +W GSE   FA + GG+T+ HVD Q V G   + +++PAAG +R VN   + GPAK+AI++ A DM RV++ L +D  K S+SQY+G +  L   A  LR   IRFVV++FP  CSYA+PA+CAH+FVT+ LVES AWHP+
Sbjct:  451 TRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHG---EHLYLPAAGTMRSVNRRGS-GPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPI 615
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BLAST of mRNA_H-canaliculatus_F_contig15069.3813.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.110e-34
Identity = 78/173 (45.09%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:    1 TRMGQLCFPRRGRHRGGSLTG------TSVDGVAWGGSECMLFA-KDGGMTNPHVDVQSVPGGTGKIIHMPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWHP 498
            TRMG LC+P      G   TG       S+  V W GSE   FA + G +T+ HVD   V     K + +PAAG +R VN  D +GPAK+AIVV A DM RV+   K+D  K    QY G +  L   A  L+   I FVV++FP  CSYA+P KCAH+ VT+ LVE+ AW+P
Sbjct:  220 TRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDALEV---NEKPLFLPAAGAMRSVNRGD-RGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNP 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15069.3813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV31_9PHAE3.400e-9683.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP46_ECTSI4.390e-7472.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S5_ECTSI3.790e-4453.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7Y6_ECTSI1.110e-3445.09Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15069contigH-canaliculatus_F_contig15069:156..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.0696802-UTR-H-canaliculatus_F_contig15069:155..1611622929249.0696802-UTR-H-canaliculatus_F_contig15069:155..161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15069 156..161 +
1696845735.3970966-UTR-H-canaliculatus_F_contig15069:155..1611696845735.3970966-UTR-H-canaliculatus_F_contig15069:155..161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15069 156..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929249.0846062-CDS-H-canaliculatus_F_contig15069:161..6561622929249.0846062-CDS-H-canaliculatus_F_contig15069:161..656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15069 162..656 +
1696845735.4071443-CDS-H-canaliculatus_F_contig15069:161..6561696845735.4071443-CDS-H-canaliculatus_F_contig15069:161..656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15069 162..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15069.3813.1prot_H-canaliculatus_F_contig15069.3813.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15069 162..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15069.3813.1

>prot_H-canaliculatus_F_contig15069.3813.1 ID=prot_H-canaliculatus_F_contig15069.3813.1|Name=mRNA_H-canaliculatus_F_contig15069.3813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
MGQLCFPRRGRHRGGSLTGTSVDGVAWGGSECMLFAKDGGMTNPHVDVQS
VPGGTGKIIHMPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKMD
TGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHV
FVTIGLVESSAWHPV
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mRNA from alignment at H-canaliculatus_F_contig15069:156..656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15069.3813.1 ID=mRNA_H-canaliculatus_F_contig15069.3813.1|Name=mRNA_H-canaliculatus_F_contig15069.3813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15069:156..656+ (Hapterophycus canaliculatus Oshoro5f female)
ACTAGAATGGGACAGCTGTGCTTTCCACGCAGGGGTAGACACAGGGGTGG
GAGTTTGACCGGTACTTCAGTAGACGGCGTTGCATGGGGGGGTAGCGAGT
GTATGCTTTTTGCGAAAGACGGTGGTATGACAAACCCGCATGTGGACGTG
CAATCTGTCCCGGGAGGAACAGGGAAAATAATCCACATGCCCGCAGCGGG
CATCATACGGAAAGTTAACCACGCAGACACCCAGGGGCCGGCAAAACAGG
CCATCGTGGTGCATGCGGACGATATGTCTAGGGTGATCGAAACGCTGAAA
ATGGACACCGGGAAGGAATCCACCAGTCAGTACAGTGGAAAGCTCCAGAC
GCTTCCGGAGTTCGCGAGAGTGCTGAGAGGTGCAGGAATTAGGTTTGTTG
TGATGAATTTTCCTGCGCGGTGCTCCTACGCCCTGCCCGCAAAGTGTGCA
CACGTGTTTGTTACGATAGGGTTGGTTGAGAGCTCGGCTTGGCACCCTGT
T
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15069:156..656+

>mRNA_H-canaliculatus_F_contig15069.3813.1 ID=mRNA_H-canaliculatus_F_contig15069.3813.1|Name=mRNA_H-canaliculatus_F_contig15069.3813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15069:156..656+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGACAGCTGTGCTTTCCACGCAGGGGTAGACACAGGGGTGGGAGTTT
GACCGGTACTTCAGTAGACGGCGTTGCATGGGGGGGTAGCGAGTGTATGC
TTTTTGCGAAAGACGGTGGTATGACAAACCCGCATGTGGACGTGCAATCT
GTCCCGGGAGGAACAGGGAAAATAATCCACATGCCCGCAGCGGGCATCAT
ACGGAAAGTTAACCACGCAGACACCCAGGGGCCGGCAAAACAGGCCATCG
TGGTGCATGCGGACGATATGTCTAGGGTGATCGAAACGCTGAAAATGGAC
ACCGGGAAGGAATCCACCAGTCAGTACAGTGGAAAGCTCCAGACGCTTCC
GGAGTTCGCGAGAGTGCTGAGAGGTGCAGGAATTAGGTTTGTTGTGATGA
ATTTTCCTGCGCGGTGCTCCTACGCCCTGCCCGCAAAGTGTGCACACGTG
TTTGTTACGATAGGGTTGGTTGAGAGCTCGGCTTGGCACCCTGTTATGGG
ACAGCTGTGCTTTCCACGCAGGGGTAGACACAGGGGTGGGAGTTTGACCG
GTACTTCAGTAGACGGCGTTGCATGGGGGGGTAGCGAGTGTATGCTTTTT
GCGAAAGACGGTGGTATGACAAACCCGCATGTGGACGTGCAATCTGTCCC
GGGAGGAACAGGGAAAATAATCCACATGCCCGCAGCGGGCATCATACGGA
AAGTTAACCACGCAGACACCCAGGGGCCGGCAAAACAGGCCATCGTGGTG
CATGCGGACGATATGTCTAGGGTGATCGAAACGCTGAAAATGGACACCGG
GAAGGAATCCACCAGTCAGTACAGTGGAAAGCTCCAGACGCTTCCGGAGT
TCGCGAGAGTGCTGAGAGGTGCAGGAATTAGGTTTGTTGTGATGAATTTT
CCTGCGCGGTGCTCCTACGCCCTGCCCGCAAAGTGTGCACACGTGTTTGT
TACGATAGGGTTGGTTGAGAGCTCGGCTTGGCACCCTGTT
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