mRNA_H-canaliculatus_F_contig15065.3811.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15065.3811.1
Unique NamemRNA_H-canaliculatus_F_contig15065.3811.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.220e-23
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPI 138
            STFKKKE+TEEGRDKYTSVLAVLLAGSF+IPMVQYWWYIRDDDR I
Sbjct:  113 STFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREI 158
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-15
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIE 141
            STFK KE TE+G++KY +VL +LL GSF+IPMVQYWWYIRD+D   E
Sbjct:  104 STFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDEDVDYE 150
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7R9U6V2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-12
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            S FK KE+T  G+++Y +VL VL+ GSFIIPM QYWWYI+DD+
Sbjct:   91 SGFKSKEETASGKNRYVAVLGVLVVGSFIIPMAQYWWYIKDDE 133
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO)

HSP 1 Score: 66.2 bits (160), Expect = 2.260e-12
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            STFK  ++T+  + KYT++LA+L+ GSFIIPM QYWWY++DDD
Sbjct:   96 STFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7S3L8Q2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8Q2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-11
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            STFK  ++T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct:   95 STFKSAKETKTKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 137
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7R9WM32_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM32_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-11
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            STFK  ++T+  + KYT++LA+L+ GSFI+PM QY+WY+RDDD
Sbjct:   98 STFKSAKETKTKKGKYTAILAILIVGSFIVPMAQYFWYVRDDD 140
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: B7FPJ6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ6_PHATC)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-11
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            STFK  ++T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct:   96 STFKDAKETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 138
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7S2Y3Q4_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y3Q4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.920e-11
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 129
            STFK   +T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct:  100 STFKSASETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 142
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7S0BLB9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLB9_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 2.280e-11
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 TFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 126
            TFK K++TE+G+ KYT+V+  LL  SF+IPMVQY+WY++DD
Sbjct:  115 TFKTKDETEKGKKKYTTVVVALLVASFVIPMVQYYWYVKDD 155
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BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.870e-11
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 TFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 126
            TFK K+DT +G+ KY +VL VLL GSF+IPM+QY+WY+R+D
Sbjct:  107 TFKSKDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15065.3811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU5_ECTSI3.220e-2393.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZB47_9STRA1.290e-1568.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U6V2_9STRA1.370e-1262.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5K6I3_FISSO2.260e-1260.47Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3L8Q2_9STRA1.780e-1162.79Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9WM32_9STRA1.780e-1158.14Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B7FPJ6_PHATC1.810e-1162.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2Y3Q4_9STRA1.920e-1162.79Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S0BLB9_9RHOD2.280e-1160.98Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2B691_9STRA3.870e-1163.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15065contigH-canaliculatus_F_contig15065:132..275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.2e-18
Seed eggNOG ortholog2880.D8LTU5
EggNOG OGs2CAH2@1,2SAK7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_002720.1
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.9645436-CDS-H-canaliculatus_F_contig15065:131..2751622929248.9645436-CDS-H-canaliculatus_F_contig15065:131..275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15065 132..275 -
1696845735.3689551-CDS-H-canaliculatus_F_contig15065:131..2751696845735.3689551-CDS-H-canaliculatus_F_contig15065:131..275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15065 132..275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15065.3811.1prot_H-canaliculatus_F_contig15065.3811.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15065 132..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15065.3811.1

>prot_H-canaliculatus_F_contig15065.3811.1 ID=prot_H-canaliculatus_F_contig15065.3811.1|Name=mRNA_H-canaliculatus_F_contig15065.3811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
STFKKKEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIE*
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mRNA from alignment at H-canaliculatus_F_contig15065:132..275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15065.3811.1 ID=mRNA_H-canaliculatus_F_contig15065.3811.1|Name=mRNA_H-canaliculatus_F_contig15065.3811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15065:132..275- (Hapterophycus canaliculatus Oshoro5f female)
AGCACGTTCAAGAAGAAGGAAGACACGGAAGAAGGCCGGGACAAGTACAC
GTCAGTGCTGGCGGTCCTCCTGGCCGGCTCGTTCATCATCCCCATGGTGC
AGTACTGGTGGTACATCCGGGATGATGACCGCCCGATCGAGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15065:132..275-

>mRNA_H-canaliculatus_F_contig15065.3811.1 ID=mRNA_H-canaliculatus_F_contig15065.3811.1|Name=mRNA_H-canaliculatus_F_contig15065.3811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15065:132..275- (Hapterophycus canaliculatus Oshoro5f female)
AGCACGTTCAAGAAGAAGGAAGACACGGAAGAAGGCCGGGACAAGTACAC
GTCAGTGCTGGCGGTCCTCCTGGCCGGCTCGTTCATCATCCCCATGGTGC
AGTACTGGTGGTACATCCGGGATGATGACCGCCCGATCGAGTAAAGCACG
TTCAAGAAGAAGGAAGACACGGAAGAAGGCCGGGACAAGTACACGTCAGT
GCTGGCGGTCCTCCTGGCCGGCTCGTTCATCATCCCCATGGTGCAGTACT
GGTGGTACATCCGGGATGATGACCGCCCGATCGAGTAA
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