mRNA_H-canaliculatus_F_contig15062.3810.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15062.3810.1
Unique NamemRNA_H-canaliculatus_F_contig15062.3810.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 7.420e-46
Identity = 84/91 (92.31%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGA+LWAKTQA YFARES QRPFLKVVNAIIKSELG LV ASDL QWQETLAILSTYAKQEEF TLCEALASRLETEAGDRKSANLCYM
Sbjct:  646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYM 736
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.740e-45
Identity = 83/91 (91.21%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGA+LWAKTQA YFARES QRPFLKVVNAIIKSELG LV  SDL QWQETLAILSTYAKQEEF TLCEALASRLETEAGDRKSANLCYM
Sbjct:  425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYM 515
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S0BZ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ92_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.820e-33
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    7 NSCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            +SCGGAELWAKTQA YF RE  +RP+L+VV+A+I S+L   V ASD  QWQETLAILSTY K EEF +LC AL +RLE EAGD  +A+LCYM
Sbjct:   23 SSCGGAELWAKTQAQYFDREVSKRPYLRVVSAVIHSQLAEFVQASDPLQWQETLAILSTYGKSEEFQSLCHALGTRLE-EAGDMPNASLCYM 113
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK)

HSP 1 Score: 119 bits (299), Expect = 1.020e-31
Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELWA TQA YF     +RPFL ++  IIKSELG LV A+ L  W+ETLAILSTYAK +EF  LCEALA+RLE EA D  +A LCYM
Sbjct:   51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYM 141
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.620e-31
Identity = 62/91 (68.13%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGA+LWAKTQA YF  E   RPFL +V+AII+SEL  LV  S L  WQETLAILSTYAK EEF  LCE LA RLE+E+ D  SA LCYM
Sbjct:  100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYM 190
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A6V2GAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GAE0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.740e-30
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELWAKTQA YFARE+++RPFL +V+A+I ++L  LVAASD  +WQETLAILSTY K EEF  LC AL +RLE  AGD  SA+LC+M
Sbjct:  545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFM 634
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S4VZF3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZF3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.760e-30
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELWAKTQA YFARE+++RPFL +V+A+I ++L  LVAASD  +WQETLAILSTY K EEF  LC AL +RLE  AGD  SA+LC+M
Sbjct:  545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFM 634
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BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 122 bits (305), Expect = 3.090e-30
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELW +T+A YF   S+ +PFL VV AII +ELG LVAASDL +W+ETLAILSTY K +EF  LCEAL  RLE EA D K+A LCYM
Sbjct:  618 SCGGAELWERTRARYFDISSKAKPFLGVVRAIITNELGALVAASDLRKWEETLAILSTYGKSDEFPALCEALGGRLEHEARDDKAAALCYM 708
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S2BT72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT72_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.160e-29
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRP-FLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELW +T+  YF RE+ +RP FL +V AII S+L  LV +S L  W+ETLAILSTY K EEF  LCE L +RLE EA D+ SA LCYM
Sbjct:   18 SCGGAELWEQTRDRYFKREAAKRPEFLNIVTAIITSKLSDLVTSSHLADWRETLAILSTYGKSEEFPILCEQLGARLEAEADDKASAALCYM 109
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.300e-29
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   10 SCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLDQWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM 282
            SCGGAELW KT+A YF + + +RPFL VV AII +EL  LV  +DL++W+ETLAILSTY K EEF  LCEAL  RLE E  D+ +A+LCYM
Sbjct:  577 SCGGAELWEKTRARYFEKAARKRPFLGVVRAIITNELDQLVQTADLNKWEETLAILSTYGKSEEFPQLCEALGQRLENEKRDQTAASLCYM 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15062.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD9_9PHAE7.420e-4692.31WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBR5_ECTSI1.740e-4591.21Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A7S0BZ92_9STRA2.820e-3367.39Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3UX94_HETAK1.020e-3165.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y0E2_9STRA1.620e-3168.13Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6V2GAE0_9STRA1.740e-3068.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VZF3_9STRA1.760e-3068.13Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
F0YCL1_AURAN3.090e-3067.03Sec16_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S2BT72_9STRA1.160e-2961.96Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4EAB3_9STRA7.300e-2962.64Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15062contigH-canaliculatus_F_contig15062:202..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.5e-39
Seed eggNOG ortholog2880.D8LBR5
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.9031878-CDS-H-canaliculatus_F_contig15062:201..3961622929248.9031878-CDS-H-canaliculatus_F_contig15062:201..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15062 202..396 +
1696845735.343553-CDS-H-canaliculatus_F_contig15062:201..3961696845735.343553-CDS-H-canaliculatus_F_contig15062:201..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15062 202..396 +
1622929248.9198086-CDS-H-canaliculatus_F_contig15062:707..7971622929248.9198086-CDS-H-canaliculatus_F_contig15062:707..797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15062 708..797 +
1696845735.3594027-CDS-H-canaliculatus_F_contig15062:707..7971696845735.3594027-CDS-H-canaliculatus_F_contig15062:707..797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15062 708..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15062.3810.1prot_H-canaliculatus_F_contig15062.3810.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15062 202..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15062.3810.1

>prot_H-canaliculatus_F_contig15062.3810.1 ID=prot_H-canaliculatus_F_contig15062.3810.1|Name=mRNA_H-canaliculatus_F_contig15062.3810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MKNSCGGAELWAKTQAMYFARESEQRPFLKVVNAIIKSELGGLVAASDLD
QWQETLAILSTYAKQEEFTTLCEALASRLETEAGDRKSANLCYM*
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mRNA from alignment at H-canaliculatus_F_contig15062:202..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15062.3810.1 ID=mRNA_H-canaliculatus_F_contig15062.3810.1|Name=mRNA_H-canaliculatus_F_contig15062.3810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15062:202..797+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAAACAGTTGCGGGGGCGCGGAACTGTGGGCCAAGACCCAAGCCAT
GTACTTCGCCAGAGAGTCGGAGCAGCGCCCCTTCCTTAAGGTGGTGAACG
CGATCATCAAGTCAGAGCTCGGCGGGCTCGTGGCGGCCAGCGACCTGGAC
CAGTGGCAGGAGACCTTGGCCATCTTGTCTACGTACGCCAAGCAGGTGCT
TGCTTCTGTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTTGACGCCTCCTCTCTTGCTCGCTTGCACGATGCGAACGAC
TGCTTTTGCTTGCTTGAGAAATTCGCACCGAAGCTGACCTTCGCCAACCC
ACACCACCTGACAACCCTTGCACACCGCGCCGCGTGTCTCGATCTGGTAA
TCTGCCTGCCTCCCTGTCGATCACCACCCTCCCCGTCCAACCTCGTCGAA
CCTCGTCGTGCTGATGCGTCGCTCGCCGTGGACTGCTCATCCGACTGCTC
GAGCAGGAGGAGTTCACGACCCTCTGCGAGGCGTTGGCGTCGAGGCTGGA
GACGGAGGCCGGGGACCGAAAGTCCGCCAACCTTTGCTACATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15062:202..797+

>mRNA_H-canaliculatus_F_contig15062.3810.1 ID=mRNA_H-canaliculatus_F_contig15062.3810.1|Name=mRNA_H-canaliculatus_F_contig15062.3810.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15062:202..797+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAAACAGTTGCGGGGGCGCGGAACTGTGGGCCAAGACCCAAGCCAT
GTACTTCGCCAGAGAGTCGGAGCAGCGCCCCTTCCTTAAGGTGGTGAACG
CGATCATCAAGTCAGAGCTCGGCGGGCTCGTGGCGGCCAGCGACCTGGAC
CAGTGGCAGGAGACCTTGGCCATCTTGTCTACGTACGCCAAGCAGATGAA
AAACAGTTGCGGGGGCGCGGAACTGTGGGCCAAGACCCAAGCCATGTACT
TCGCCAGAGAGTCGGAGCAGCGCCCCTTCCTTAAGGTGGTGAACGCGATC
ATCAAGTCAGAGCTCGGCGGGCTCGTGGCGGCCAGCGACCTGGACCAGTG
GCAGGAGACCTTGGCCATCTTGTCTACGTACGCCAAGCAGGAGGAGTTCA
CGACCCTCTGCGAGGCGTTGGCGTCGAGGCTGGAGACGGAGGCCGGGGAC
CGAAAGTCCGCCAACCTTTGCTACATGTGAGAGGAGTTCACGACCCTCTG
CGAGGCGTTGGCGTCGAGGCTGGAGACGGAGGCCGGGGACCGAAAGTCCG
CCAACCTTTGCTACATGTGA
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