mRNA_H-canaliculatus_F_contig1506.3807.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1506.3807.1
Unique NamemRNA_H-canaliculatus_F_contig1506.3807.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1506.3807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1506contigH-canaliculatus_F_contig1506:8482..10043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size287
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1506.3807.1prot_H-canaliculatus_F_contig1506.3807.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1506 8482..9334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.142377-CDS-H-canaliculatus_F_contig1506:8481..85201622929248.142377-CDS-H-canaliculatus_F_contig1506:8481..8520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 8482..8520 -
1696845735.0326438-CDS-H-canaliculatus_F_contig1506:8481..85201696845735.0326438-CDS-H-canaliculatus_F_contig1506:8481..8520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 8482..8520 -
1622929248.1728725-CDS-H-canaliculatus_F_contig1506:9229..93341622929248.1728725-CDS-H-canaliculatus_F_contig1506:9229..9334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 9230..9334 -
1696845735.0493963-CDS-H-canaliculatus_F_contig1506:9229..93341696845735.0493963-CDS-H-canaliculatus_F_contig1506:9229..9334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1506 9230..9334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929248.1984355-UTR-H-canaliculatus_F_contig1506:9334..94051622929248.1984355-UTR-H-canaliculatus_F_contig1506:9334..9405Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1506 9335..9405 -
1696845735.0585873-UTR-H-canaliculatus_F_contig1506:9334..94051696845735.0585873-UTR-H-canaliculatus_F_contig1506:9334..9405Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1506 9335..9405 -
1622929248.2156596-UTR-H-canaliculatus_F_contig1506:9972..100431622929248.2156596-UTR-H-canaliculatus_F_contig1506:9972..10043Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1506 9973..10043 -
1696845735.0694454-UTR-H-canaliculatus_F_contig1506:9972..100431696845735.0694454-UTR-H-canaliculatus_F_contig1506:9972..10043Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1506 9973..10043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1506.3807.1

>prot_H-canaliculatus_F_contig1506.3807.1 ID=prot_H-canaliculatus_F_contig1506.3807.1|Name=mRNA_H-canaliculatus_F_contig1506.3807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
MKSGPARTTRLYSSSKDNLERGGVVTGFDFMDDRPLHSPGDMSSCSSA
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mRNA from alignment at H-canaliculatus_F_contig1506:8482..10043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1506.3807.1 ID=mRNA_H-canaliculatus_F_contig1506.3807.1|Name=mRNA_H-canaliculatus_F_contig1506.3807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1562bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:8482..10043- (Hapterophycus canaliculatus Oshoro5f female)
ATCACCGTGTCTGACGAGAGATCACAAGAGCCCCGCGTGAACCTGCCGTC
TCTATTCTGCACCACACGTAGGTAAACAGGAGCGTGGCTCTCTTTCTCTG
AGTAGACCAAGGTTTCCTTCCAAGAAGATCATCGGGTCGCAGGTATATCT
GCACAGCATTTCGGAAACATGATATTTCCACGGCACGTCGCTGCTTCGAT
CGGAGGGAAAGACGGGCGAAGGCGGGCAATAGCATTTGAACAGCAGCCGC
AAGAGCAGCTCCAACCATACCTCAACGATTTCTGTGGTGCAGGGTAGGAA
AGACCCATAAGTCCTCCAGCAGCGCCTTCATTGGGCGTTGCTCGCTCTGT
AAACTCGAAGATGGAGTGTGGATGGTTCGCGCTGGAATTGTCAAAAAGAG
AGCCAGTGAAACCAGAAAACTACGGTTCTTCTGGTGTGGTTTCGAGCAGC
AGCACACGCGGCCGACGAACTCCTGACCTTTCGATCCAGCAAAGCCTTCA
CCTTTTTCGAGAACAGAAACGTTGCAGACCGCACGTCCCCCCGTCCTCTA
GCGAAGCGTACGAGCAACCTTCATCGGTACATCACGGGCATTGTTGGCAC
TTGTCCTCTCCTTCCTCCTCTCACGCCTTTTTCTCCAGGTACAACATCTG
ATCTCCCGGAGTTGGAGAAAACGAGATCGTCGCACCCCCGCCAGACGCAT
GGTGTTGGAATGAAAAGTGGCCCAGCGAGGACGACCAGGCTCTACTCGAG
CAGCAAGGATAACCTCGAGAGAGGCGGTGTAGTCACGGGTTTCGATTTCA
TGGACGACAGGCCGGTGAGTAAGGGATAATATGATCTGATGGCGAACATG
TGGTAAAAAAACGGCGGAACAGCGGCAGAGAAGCGGCCCACTTCGTCTCT
GTGAGTTGCACAACGTGTCAGGCTGTTTCACGTGCCTGCGGAAGAAGAGC
GTAATGCTGCGCATTGGGTTCCCTTTTTCGTATATGACGTGCACATCTTT
TTCGCTGTTGGGTTGGTTATGGTACGGCCATACTGTGGGATGGATAATGG
TACAGCAGTAGTATCGCACAATCAGTGCCAAGCGACAGACAGACAACAAC
AACGACGCAACAACACAACAGGCTTTGCACCAAGGACTAGGGGCGGGGAG
ATAGCAGGTCTCTGCAAGCCGTTTTGACGCTTCCACAACTTCCGTTCCGC
CCGACCGCGTAGTCCGCACATCATGGTACGTCAAGCCCGTGCACCGCTTA
CGACGACGTCACCGGTAGCTCTCGGTACCCCTAAGAACAACCGCGTTCGA
AGGGAGAAATATGTATCGATTGTATTGTGCCTTCCTATCGATTTGTATCA
CTCCGCGGACTTATTTGTCTCCCTTTCTCCCCTATTGAACCAATGGTGTC
CTGCGATCACCCTCTCCCCCCCCCCCATTTTCTGTCCGCCTTCCGTCTCC
GTGTCTGCATATTTCTGTGTTGGTCCACTTCTTCTCATGGGGCAAATACA
CCTCTGTGCATGAGCGTGTCCAGTTACACTCCCCTGGTGACATGAGTTCT
TGTTCGAGCGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1506:8482..10043-

>mRNA_H-canaliculatus_F_contig1506.3807.1 ID=mRNA_H-canaliculatus_F_contig1506.3807.1|Name=mRNA_H-canaliculatus_F_contig1506.3807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1506:8482..10043- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAAGTGGCCCAGCGAGGACGACCAGGCTCTACTCGAGCAGCAAGGA
TAACCTCGAGAGAGGCGGTGTAGTCACGGGTTTCGATTTCATGGACGACA
GGCCGATGAAAAGTGGCCCAGCGAGGACGACCAGGCTCTACTCGAGCAGC
AAGGATAACCTCGAGAGAGGCGGTGTAGTCACGGGTTTCGATTTCATGGA
CGACAGGCCGTTACACTCCCCTGGTGACATGAGTTCTTGTTCGAGCGCAT
TACACTCCCCTGGTGACATGAGTTCTTGTTCGAGCGCA
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