mRNA_H-canaliculatus_F_contig15059.3803.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15059.3803.1
Unique NamemRNA_H-canaliculatus_F_contig15059.3803.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15059.3803.1 vs. uniprot
Match: A0A6H5KQ78_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ78_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.230e-8
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -2 
Query:  760 KAERLAREGTKASVDLDQVRADSNLMELMDESIYDD 867
            +AERLAR+GTKASVDLDQVRADSNLMELMDESIYDD
Sbjct:  618 EAERLARQGTKASVDLDQVRADSNLMELMDESIYDD 653
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BLAST of mRNA_H-canaliculatus_F_contig15059.3803.1 vs. uniprot
Match: D8LG88_ECTSI (Ankyrin repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG88_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.320e-8
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -2 
Query:  760 KAERLAREGTKASVDLDQVRADSNLMELMDESIYDD 867
            +AERLAR+GTKASVDLDQVRADSNLMELMDESIYDD
Sbjct:  697 EAERLARQGTKASVDLDQVRADSNLMELMDESIYDD 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15059.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ78_9PHAE1.230e-894.44Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LG88_ECTSI1.320e-894.44Ankyrin repeat-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15059contigH-canaliculatus_F_contig15059:186..1740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1556
Cds size960
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.9374287-CDS-H-canaliculatus_F_contig15059:185..11451622929247.9374287-CDS-H-canaliculatus_F_contig15059:185..1145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15059 186..1145 +
1696845734.9758549-CDS-H-canaliculatus_F_contig15059:185..11451696845734.9758549-CDS-H-canaliculatus_F_contig15059:185..1145Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15059 186..1145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929247.948406-UTR-H-canaliculatus_F_contig15059:1145..17401622929247.948406-UTR-H-canaliculatus_F_contig15059:1145..1740Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15059 1146..1740 +
1696845734.9841459-UTR-H-canaliculatus_F_contig15059:1145..17401696845734.9841459-UTR-H-canaliculatus_F_contig15059:1145..1740Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15059 1146..1740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15059.3803.1prot_H-canaliculatus_F_contig15059.3803.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15059 186..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15059.3803.1

>prot_H-canaliculatus_F_contig15059.3803.1 ID=prot_H-canaliculatus_F_contig15059.3803.1|Name=mRNA_H-canaliculatus_F_contig15059.3803.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=320bp
KNPHTIPLRSTTIGRACLPACLLATRRLTNSTRRLQITRKTRLSTPGDGK
GASSRGRSPPPPASERQGGPWECTESRAHRSYAHQESARLASAGVVLHGA
RSLDQSKRYNTVRKVEENSSTTRTAGAPEVEPPLAQRGFVRGFPRKSNDP
NLHQPSPYRPSLLLSGISAVGRLPAVVSIGDVTTPKFFPRQGHDDVTSKS
RIKTVRQLLGSVGSVSPKSLHVEATMKITNGAPALGFCEKAEWGKATRVL
VCLVVVDALVHELHEVGVRSHLVEVDRRFRSFPSQPLRLEDDTPQHHGTK
PDVTNHHTAATMTKISMLL*
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mRNA from alignment at H-canaliculatus_F_contig15059:186..1740+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15059.3803.1 ID=mRNA_H-canaliculatus_F_contig15059.3803.1|Name=mRNA_H-canaliculatus_F_contig15059.3803.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1555bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15059:186..1740+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAACCCGCACACGATACCACTTCGTAGTACAACAATTGGCCGTGCGTG
CCTACCCGCGTGCCTGCTTGCTACACGACGTCTCACCAACAGCACCCGAA
GGCTTCAGATAACCCGAAAAACGAGGCTCTCTACGCCGGGAGATGGCAAA
GGCGCGAGTAGCCGCGGGCGATCACCACCACCGCCGGCATCAGAGCGCCA
AGGTGGACCGTGGGAATGTACAGAGAGCAGGGCCCACCGCAGTTACGCCC
ATCAAGAATCGGCGCGTTTGGCCTCAGCGGGCGTGGTCTTGCACGGCGCA
CGGTCGCTCGATCAATCGAAGCGGTACAATACAGTACGCAAGGTCGAGGA
GAACAGCTCTACAACACGCACCGCAGGAGCACCAGAGGTCGAGCCGCCAC
TCGCTCAGCGGGGATTTGTGCGCGGATTCCCGAGGAAGAGTAACGATCCC
AACCTTCACCAACCTTCACCCTACAGACCCAGCCTACTGCTGTCGGGGAT
TTCGGCTGTTGGACGTCTCCCAGCGGTCGTCAGTATTGGCGACGTCACAA
CACCCAAATTTTTTCCGCGCCAAGGTCACGATGACGTCACCTCTAAATCT
AGGATCAAAACAGTGAGGCAACTCTTGGGCTCAGTTGGCTCCGTCTCCCC
CAAAAGTCTTCACGTCGAGGCCACGATGAAGATCACGAACGGTGCGCCAG
CTTTGGGCTTTTGTGAGAAAGCGGAATGGGGCAAAGCAACCCGAGTCCTG
GTTTGCTTAGTCGTCGTAGATGCTCTCGTCCATGAGCTCCATGAGGTTGG
AGTCCGCTCGCACTTGGTCGAGGTCGACCGACGCTTTCGTTCCTTCCCGA
GCCAGCCTCTCCGCCTTGAGGACGATACACCACAGCACCACGGCACGAAA
CCGGACGTGACAAACCACCACACGGCCGCGACGATGACGAAAATCAGCAT
GTTGTTGTAGTTGTTTGATTTAGCGAGGAAAGCACGTCCGTACACGATCA
CTAGGACAGCTAGGACTACGACCATGACGACGATGATCACATGGAACGCA
AGTGAAGGCACTGACTCAAGAGCCGACAACGCAGCCCCACTGCTTCGCCA
CTCGGGCGATGATCGGAGTCATCGATTCACCTCCGGCGAAGAAGCCGGTT
GCAGGCAAATCAACAGGATGAGCCGGTGATCCATCGACCGAAGGGGACGA
GTGTGCAATTGCGCGGCGCGTCTCCTCGAAACGACGTCACCACCAGAGTT
TTCAACTTTCAAGCCAGACCCCGCCCCGCCATCGAGATCCAGGCGTCACG
GCACAAACACGGTGCTTTCGCTGGACGCATGGATCGCTTTTCACTTTTCA
CGTCGGGCGCCGTCGGGCGCCGGGGCACAGTCACATCAATTGCTGCCACA
CGCCGCCGCACGTCACTGCCGTGCGTCGCTGCCGTGCTTCGCTTCACGGC
GGCGCGCGTGCACCTCTCGTCAGACCGCGCCGCTGAAGGCGGACGCTCCG
CACAAGCGCAACGGGCACGTGCCGAACAGTTCTTACCTTCAGCAGCCGCC
GCTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15059:186..1740+

>mRNA_H-canaliculatus_F_contig15059.3803.1 ID=mRNA_H-canaliculatus_F_contig15059.3803.1|Name=mRNA_H-canaliculatus_F_contig15059.3803.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1920bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15059:186..1740+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAACCCGCACACGATACCACTTCGTAGTACAACAATTGGCCGTGCGTG
CCTACCCGCGTGCCTGCTTGCTACACGACGTCTCACCAACAGCACCCGAA
GGCTTCAGATAACCCGAAAAACGAGGCTCTCTACGCCGGGAGATGGCAAA
GGCGCGAGTAGCCGCGGGCGATCACCACCACCGCCGGCATCAGAGCGCCA
AGGTGGACCGTGGGAATGTACAGAGAGCAGGGCCCACCGCAGTTACGCCC
ATCAAGAATCGGCGCGTTTGGCCTCAGCGGGCGTGGTCTTGCACGGCGCA
CGGTCGCTCGATCAATCGAAGCGGTACAATACAGTACGCAAGGTCGAGGA
GAACAGCTCTACAACACGCACCGCAGGAGCACCAGAGGTCGAGCCGCCAC
TCGCTCAGCGGGGATTTGTGCGCGGATTCCCGAGGAAGAGTAACGATCCC
AACCTTCACCAACCTTCACCCTACAGACCCAGCCTACTGCTGTCGGGGAT
TTCGGCTGTTGGACGTCTCCCAGCGGTCGTCAGTATTGGCGACGTCACAA
CACCCAAATTTTTTCCGCGCCAAGGTCACGATGACGTCACCTCTAAATCT
AGGATCAAAACAGTGAGGCAACTCTTGGGCTCAGTTGGCTCCGTCTCCCC
CAAAAGTCTTCACGTCGAGGCCACGATGAAGATCACGAACGGTGCGCCAG
CTTTGGGCTTTTGTGAGAAAGCGGAATGGGGCAAAGCAACCCGAGTCCTG
GTTTGCTTAGTCGTCGTAGATGCTCTCGTCCATGAGCTCCATGAGGTTGG
AGTCCGCTCGCACTTGGTCGAGGTCGACCGACGCTTTCGTTCCTTCCCGA
GCCAGCCTCTCCGCCTTGAGGACGATACACCACAGCACCACGGCACGAAA
CCGGACGTGACAAACCACCACACGGCCGCGACGATGACGAAAATCAGCAT
GTTGTTGTAGAAAAACCCGCACACGATACCACTTCGTAGTACAACAATTG
GCCGTGCGTGCCTACCCGCGTGCCTGCTTGCTACACGACGTCTCACCAAC
AGCACCCGAAGGCTTCAGATAACCCGAAAAACGAGGCTCTCTACGCCGGG
AGATGGCAAAGGCGCGAGTAGCCGCGGGCGATCACCACCACCGCCGGCAT
CAGAGCGCCAAGGTGGACCGTGGGAATGTACAGAGAGCAGGGCCCACCGC
AGTTACGCCCATCAAGAATCGGCGCGTTTGGCCTCAGCGGGCGTGGTCTT
GCACGGCGCACGGTCGCTCGATCAATCGAAGCGGTACAATACAGTACGCA
AGGTCGAGGAGAACAGCTCTACAACACGCACCGCAGGAGCACCAGAGGTC
GAGCCGCCACTCGCTCAGCGGGGATTTGTGCGCGGATTCCCGAGGAAGAG
TAACGATCCCAACCTTCACCAACCTTCACCCTACAGACCCAGCCTACTGC
TGTCGGGGATTTCGGCTGTTGGACGTCTCCCAGCGGTCGTCAGTATTGGC
GACGTCACAACACCCAAATTTTTTCCGCGCCAAGGTCACGATGACGTCAC
CTCTAAATCTAGGATCAAAACAGTGAGGCAACTCTTGGGCTCAGTTGGCT
CCGTCTCCCCCAAAAGTCTTCACGTCGAGGCCACGATGAAGATCACGAAC
GGTGCGCCAGCTTTGGGCTTTTGTGAGAAAGCGGAATGGGGCAAAGCAAC
CCGAGTCCTGGTTTGCTTAGTCGTCGTAGATGCTCTCGTCCATGAGCTCC
ATGAGGTTGGAGTCCGCTCGCACTTGGTCGAGGTCGACCGACGCTTTCGT
TCCTTCCCGAGCCAGCCTCTCCGCCTTGAGGACGATACACCACAGCACCA
CGGCACGAAACCGGACGTGACAAACCACCACACGGCCGCGACGATGACGA
AAATCAGCATGTTGTTGTAG
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