mRNA_H-canaliculatus_F_contig15057.3802.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI) HSP 1 Score: 109 bits (272), Expect = 5.020e-24 Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLH-----RARRXXXXXXXXXXXXXXXXXXXXAGTNSGGT--ATVMPWVYRPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEAI 557
G +FTV G++ HA QGP P+DG EED +S++ V G F + YT SG++ +L Y ENP WMRLH RARR XXXXXXXXXXXXX G T ++ + FSP A + TF R+ SP+ I VGEELR+P TMTS+ V+++G DGSLL R ++ + +A+
Sbjct: 1211 GAIFTVERQGYVGLHAHGQGPTPQDGYEEDNNSLVHVQTGGEFFFDCHARYTASGMSAVLIPYPENPSWMRLHVPSRLRARRQLEQQHHXXXXXXXXXXXXXXXXXXGTTPPSSTVGEFSSLFSPSA--QHTFQDRQLLSPSYITVGEELRFPSTMTSLDEKHVMAMGFDGSLLHTGPQRYRFFRDEMVQAV 1400
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.260e-23 Identity = 82/192 (42.71%), Postives = 109/192 (56.77%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLH-----RARRXXXXXXXXXXXXXXXXXXXXAGTNSGGT--ATVMPWVYRPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEAI 557
G +FTV G++ HA QGP+P+DG+EED +S++ V G F + YT SG++ +L Y ENP WMRLH R RR XXXXXXXXXXXXX T +T FSP A + TF R+ SP+ I VGEELR+P TMTS+ V+++G DGSLL R ++ + +A+
Sbjct: 1212 GAIFTVEPQGYVGLHAHGQGPVPQDGSEEDNNSLVHVQTGGEFFFDCHARYTTSGMSAVLIPYPENPSWMRLHVLSRLRTRRQLEQQHHXXXXXXXXXXXXXXXXXXXTTPPSTTAGEFSSLFSPSA--QHTFQDRQLLSPSYITVGEELRFPSTMTSLDEKHVMAMGFDGSLLHTGPQRYRFFREEMVQAV 1401
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.030e-20 Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLHRARRXXXXXXXXXXXXXXXXXXXXAGTNSGGTATVMPWVYR---------PFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEAITVTTTV 575
GE+FT+ GG L ++ PLPE+G ++D HS++ EG F V YT S +T++ E+P W+RL R RR W+ R PFSP S E T+ QR P + VGEELR+P ++T++ +++G DGSL++A R + + EA+ +V
Sbjct: 697 GEIFTIEPGGFLGGQFDQLRPLPENGTKKDEHSLLHAKEGGEFYFDALVRYTSSSITMVAVSVIEDPAWIRLQRLRRR--------------------------------WIERHFQRHQQQSPFSPDRSAEYTYEQRLGLKPTHLMVGEELRFPSSLTTLDRSHTMTMGTDGSLVLAKADRYVVLFDEMIEAVETRASV 864
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.360e-19 Identity = 67/187 (35.83%), Postives = 99/187 (52.94%), Query Frame = 3
Query: 6 ELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLHRARRXXXXXXXXXXXXXXXXXXXXAGTNSGGTATVMPWVY----RPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEA 554
E+FT+ G++ H GPLPEDG ++D HS++ + +G V V YT S + + A++ W++L R RR XXXXXXXXX + G +A Y PFSP+ + TF +R +P + GEELR+P MTS+ V+++G DGSL++A AR + V+ A
Sbjct: 1148 EIFTIEPEGYVGLHPTAWGPLPEDGTKKDAHSLVNIKKGGELFVGAEVRYTASSMKVAKTPVAKDLVWIQLQRLRRRWLEQQYQQRLXXXXXXXXXEDGDRGASAAAGSPPYGDDLSPFSPERYAKYTFEERLKLTPTYLMAGEELRFPSRMTSLDRRHVMTVGSDGSLVLANIARYHGLRREVKRA 1334
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 6.950e-17 Identity = 59/183 (32.24%), Postives = 84/183 (45.90%), Query Frame = 3
Query: 9 LFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLHRARRXXXXXXXXXXXXXXXXXXXXAGTNSGGTATVMPWVYRPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEAI 557
L V GG L G PE G DT+S +R++EG V G +T+S +TL+ + + P W+ + R G T P PF P+ S +F +R SP+ ++VGEELRYP +MTS+ GSVLS+G DG+LL A R ++ A+
Sbjct: 176 LLRVDPGGLLRLEIHDFGTPPEGGTMTDTNSRVRIEEGGEVQVWGEPWFTKSAITLMK-PFKKEPSWILNNMRRNHAHWQRQRWNRQQQQKMTGGQHAGGGTTGKPQPPFCSPFGPKISEGYSFWERFDISPSYLKVGEELRYPSSMTSLMDGSVLSMGADGTLLHATADRRTHFHLEMKTAV 357
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: A0A6H5JJM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM2_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.290e-16 Identity = 70/190 (36.84%), Postives = 98/190 (51.58%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAENPEWMRLH-----RARRXXXXXXXXXXXXXXXXXXXXAGTNSGGTATVMPWVYRPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEATVEEAI 557
G +FTV G++ +A QGP+P DG+EEDT+S++ V G F + YT SG++ ++ Y ENP WMRLH R RR XXXXXXXXXXX +P ++ FS + VGEELR+P TMTS+ V+++G DGSLL R ++ + +A+
Sbjct: 203 GAIFTVEPQGYVGLYAHGQGPVPHDGSEEDTNSLVHVQTGGEFFFDCHARYTASGMSAVVIPYPENPSWMRLHVLSWLRTRRQLEQQHHXXXXXXXXXXX------------XXXXXXXXTTPPSTTAGEFS---FWPGSGCLVGEELRFPSTMTSLDEKHVMTMGFDGSLLHTGPQRYRFFRDEMVQAV 377
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 7.310e-6 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAE 197
GELFTV G L A+K P P++G EED HS++ +++G RF++ G +T S +T+ + +E
Sbjct: 750 GELFTVEPQGVLAMSADKWSPSPDNGTEEDVHSLVALEKGGRFELDGKASFTASTMTISMRNKSE 814
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Match: D8LLQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ1_ECTSI) HSP 1 Score: 55.1 bits (131), Expect = 1.630e-5 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 3
Query: 3 GELFTVHSGGHLTFHAEKQGPLPEDGNEEDTHSVIRVDEGERFDVSGYVEYTESGVTLILGKYAE 197
GELFTV G L A+K P P++G EED HS++ + +G RF++ G +T S +T+ + +E
Sbjct: 188 GELFTVEPQGVLAMSADKWSPSPDNGTEEDVHSLVALKKGGRFELDGKASFTGSTMTISMRNKSE 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15057.3802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15057.3802.1 >prot_H-canaliculatus_F_contig15057.3802.1 ID=prot_H-canaliculatus_F_contig15057.3802.1|Name=mRNA_H-canaliculatus_F_contig15057.3802.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp MPWVYRPFSPQASRESTFSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLback to top mRNA from alignment at H-canaliculatus_F_contig15057:2..2434+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15057.3802.1 ID=mRNA_H-canaliculatus_F_contig15057.3802.1|Name=mRNA_H-canaliculatus_F_contig15057.3802.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2433bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15057:2..2434+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15057:2..2434+ >mRNA_H-canaliculatus_F_contig15057.3802.1 ID=mRNA_H-canaliculatus_F_contig15057.3802.1|Name=mRNA_H-canaliculatus_F_contig15057.3802.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15057:2..2434+ (Hapterophycus canaliculatus Oshoro5f female)back to top |